RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 DDX28Q9NUL7 540 aaKnown RBP23.49■■□□□ 1.35
MSX1-201ENST00000382723 TIMM10BQ9Y5J6 103 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 A0A1W2PPK0 400 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 CDRT1O95170 752 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 IL18BPO95998 194 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 TMIGD3P0DMS9 266 aaPredicted RBP23.49■■□□□ 1.35
MSX1-201ENST00000382723 MAGEB1P43366 347 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 PCBD1P61457 104 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 GRB2P62993 217 aaKnown RBP23.49■■□□□ 1.35
MSX1-201ENST00000382723 TUBA1BP68363 451 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 SCRN3Q0VDG4 424 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 YIF1BQ5BJH7 314 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 ZNF774Q6NX45 483 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 TUBA1AQ71U36 451 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 BTLAQ7Z6A9 289 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 AKR7LQ8NHP1 331 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 PPIL3Q9H2H8 161 aaKnown RBP23.49■■□□□ 1.35
MSX1-201ENST00000382723 G6PC2Q9NQR9 355 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 FAM206AQ9NX38 181 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 SC5DO75845 299 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 TNFSF13O75888 250 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 IL2RAP01589 272 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 DCTDP32321 178 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 RPS19P39019 145 aaKnown RBP23.48■■□□□ 1.35
MSX1-201ENST00000382723 ZNF627Q7L945 461 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 NAXEQ8NCW5 288 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 SLC7A6Q92536 515 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 TP63Q9H3D4 680 aaPredicted RBP23.48■■□□□ 1.35
MSX1-201ENST00000382723 NIPAL2Q9H841 368 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 RNF121Q9H920 327 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 SH3BGRL2Q9UJC5 107 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 TINAGQ9UJW2 476 aa23.48■■□□□ 1.35
MSX1-201ENST00000382723 TLN1Q9Y490 2541 aaKnown RBP23.47■■□□□ 1.35
MSX1-201ENST00000382723 FREM1Q5H8C1 2179 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 F5H5K5 113 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 HOXD4P09016 255 aaPredicted RBP23.47■■□□□ 1.35
MSX1-201ENST00000382723 SLC2A1P11166 492 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 CALRP27797 417 aaKnown RBP23.47■■□□□ 1.35
MSX1-201ENST00000382723 SDC2P34741 201 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 CX3CR1P49238 355 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 MMP16P51512 607 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 PSG4Q00888 419 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 ZMAT1Q5H9K5 638 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 BCL2L15Q5TBC7 163 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 ZNF283Q8N7M2 679 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 OR10AC1Q8NH08 325 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 OR2H1Q9GZK4 316 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 TPK1Q9H3S4 243 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 SNTG1Q9NSN8 517 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 SFTPCP11686 197 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 RAB35Q15286 201 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 DGUOKQ16854 277 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 SYT9Q86SS6 491 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 STARD4Q96DR4 205 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 KCNJ15Q99712 375 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 ZNF224Q9NZL3 707 aa23.47■■□□□ 1.35
MSX1-201ENST00000382723 GTF3C1Q12789 2109 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 SMIM30A4D0T7 59 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 HLA-HP01893 362 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 CLEC2LP0C7M8 214 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 ZNF121P58317 390 aaPredicted RBP23.46■■□□□ 1.35
MSX1-201ENST00000382723 PSMA6P60900 246 aaKnown RBP23.46■■□□□ 1.35
MSX1-201ENST00000382723 SLC36A2Q495M3 483 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 HIKESHIQ53FT3 197 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 OR51A4Q8NGJ6 313 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 OR1K1Q8NGR3 316 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 PBOV1Q9GZY1 135 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 HDHD2Q9H0R4 259 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 WNT5BQ9H1J7 359 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 PLSCR4Q9NRQ2 329 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 PROCRQ9UNN8 238 aa23.46■■□□□ 1.35
MSX1-201ENST00000382723 MAP1BP46821 2468 aaKnown RBP23.46■■□□□ 1.35
MSX1-201ENST00000382723 DBHP09172 617 aa23.45■■□□□ 1.35
MSX1-201ENST00000382723 MMP7P09237 267 aaPredicted RBP23.45■■□□□ 1.35
MSX1-201ENST00000382723 IGHV1-2P23083 117 aa23.45■■□□□ 1.35
MSX1-201ENST00000382723 TIMP3P35625 211 aa23.45■■□□□ 1.35
MSX1-201ENST00000382723 SOX2P48431 317 aa23.45■■□□□ 1.35
MSX1-201ENST00000382723 SH3BGRP55822 239 aaPredicted RBP23.45■■□□□ 1.35
MSX1-201ENST00000382723 ANKRD16Q6P6B7 361 aa23.45■■□□□ 1.35
MSX1-201ENST00000382723 Q6ZT83 130 aa23.45■■□□□ 1.35
MSX1-201ENST00000382723 OPN3Q9H1Y3 402 aaPredicted RBP23.45■■□□□ 1.35
MSX1-201ENST00000382723 ZNF835Q9Y2P0 537 aa23.45■■□□□ 1.35
MSX1-201ENST00000382723 SHISA3A0PJX4 238 aa23.45■■□□□ 1.34
MSX1-201ENST00000382723 ACOD1A6NK06 481 aa23.45■■□□□ 1.34
MSX1-201ENST00000382723 ZNF879B4DU55 563 aa23.45■■□□□ 1.34
MSX1-201ENST00000382723 SYNGR3O43761 229 aa23.45■■□□□ 1.34
MSX1-201ENST00000382723 OCM2P0CE71 109 aa23.45■■□□□ 1.34
MSX1-201ENST00000382723 GLI4P10075 376 aa23.45■■□□□ 1.34
MSX1-201ENST00000382723 CD79AP11912 226 aa23.45■■□□□ 1.34
MSX1-201ENST00000382723 RBPJQ06330 500 aa23.45■■□□□ 1.34
MSX1-201ENST00000382723 OR1F12Q8NHA8 337 aa23.45■■□□□ 1.34
MSX1-201ENST00000382723 CASKO14936 926 aa23.44■■□□□ 1.34
MSX1-201ENST00000382723 LYZL6O75951 148 aa23.44■■□□□ 1.34
MSX1-201ENST00000382723 ANXA2P07355 339 aaKnown RBP23.44■■□□□ 1.34
MSX1-201ENST00000382723 EDN3P14138 238 aa23.44■■□□□ 1.34
MSX1-201ENST00000382723 SLC6A9P48067 706 aa23.44■■□□□ 1.34
MSX1-201ENST00000382723 RSPO1Q2MKA7 263 aaPredicted RBP23.44■■□□□ 1.34
MSX1-201ENST00000382723 PABPC1L2AQ5JQF8 200 aa23.44■■□□□ 1.34
MSX1-201ENST00000382723 NAA40Q86UY6 237 aa23.44■■□□□ 1.34
MSX1-201ENST00000382723 ZNF610Q8N9Z0 462 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms