RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 RPLP1P05386 114 aaKnown RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 SDC1P18827 310 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 ACAA2P42765 397 aaKnown RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 TEKQ02763 1124 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 GAMTQ14353 236 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 GLIPR1L1Q6UWM5 242 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 MAML2Q8IZL2 1156 aaPredicted RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 MBD3L1Q8WWY6 194 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 ATG101Q9BSB4 218 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 WDR61Q9GZS3 305 aaKnown RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 SIT1Q9Y3P8 196 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 IGHV3-64DA0A0J9YX35 117 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 M0R3E3 92 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 HTR1DP28221 377 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 DSC1Q08554 894 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 AANATQ16613 207 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 FAM26EQ8N5C1 309 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 PSENENQ9NZ42 101 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 PAPLNO95428 1278 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 SLC10A2Q12908 348 aaPredicted RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 KLRB1Q12918 225 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 B3GNTL1Q67FW5 361 aaPredicted RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 FAM71CQ8NEG0 241 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 RSRP1Q9BUV0 290 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 UBTD1Q9HAC8 227 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 CTSFQ9UBX1 484 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 ATP23Q9Y6H3 246 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 FCN1O00602 326 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 SFTA3P0C7M3 94 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 CSF2RBP32927 897 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 CNN1P51911 297 aaKnown RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 EMP1P54849 157 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 SNRPEP62304 92 aaKnown RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 SYT6Q5T7P8 510 aaPredicted RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 ISG20Q96AZ6 181 aaKnown RBP11.79□□□□□ -0.52
USP47-202ENST00000339865 C12orf49Q9H741 205 aa11.79□□□□□ -0.52
USP47-202ENST00000339865 NAV1Q8NEY1 1877 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 G3V2L1 256 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 ZFAND5O76080 213 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 SLC10A3P09131 477 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 GPX3P22352 226 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 DGAT2L7PQ6IED9 249 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 ZNF429Q86V71 674 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 GPA33Q99795 319 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 ZNF2Q9BSG1 426 aaPredicted RBP11.78□□□□□ -0.52
USP47-202ENST00000339865 TMEM208Q9BTX3 173 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 MAP1LC3CQ9BXW4 147 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 CYB5R1Q9UHQ9 305 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 SPO11Q9Y5K1 396 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 ZNF195O14628 629 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 OR52L2PQ8NGH6 319 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 OR6M1Q8NGM8 313 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 OR1L3Q8NH93 324 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 IGSF8Q969P0 613 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 UFC1Q9Y3C8 167 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 H7C2G1 150 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 AP4M1O00189 453 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 SDCBPO00560 298 aaPredicted RBP11.78□□□□□ -0.52
USP47-202ENST00000339865 TMEM127O75204 238 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 HTN1P15515 57 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 ARHGEF39Q8N4T4 335 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 OR52I2Q8NH67 350 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 CLEC2DQ9UHP7 191 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 CD207Q9UJ71 328 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 MGMTP16455 207 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 DAPP51397 102 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 TSPAN31Q12999 210 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 MIDNQ504T8 468 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 ACVR1CQ8NER5 493 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 SLC25A46Q96AG3 418 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 SPACA9Q96E40 222 aaPredicted RBP11.78□□□□□ -0.52
USP47-202ENST00000339865 IER2Q9BTL4 223 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 PAM16Q9Y3D7 125 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 TCRBV3S1A0A5B6 114 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 CLEC18AA5D8T8 446 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 LRP3O75074 770 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 MMP11P24347 488 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 LSM11P83369 360 aaKnown RBP eCLIP11.78□□□□□ -0.522e-20■■■■■ 46.3
USP47-202ENST00000339865 BCDIN3DQ7Z5W3 292 aaKnown RBP11.78□□□□□ -0.52
USP47-202ENST00000339865 CLEC18CQ8NCF0 446 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 MAGT1Q9H0U3 335 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 ERCC6L2Q5T890 1561 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 OR4C46A6NHA9 309 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 ZNF140P52738 457 aaPredicted RBP11.78□□□□□ -0.52
USP47-202ENST00000339865 ZNF77Q15935 545 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 GABRA6Q16445 453 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 SYPL1Q16563 259 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 TBC1D28Q2M2D7 210 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 AAED1Q7RTV5 226 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 CHAC2Q8WUX2 184 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 ACY3Q96HD9 319 aa11.78□□□□□ -0.52
USP47-202ENST00000339865 SELENOFO60613 162 aa11.77□□□□□ -0.52
USP47-202ENST00000339865 PIPP12273 146 aaPredicted RBP11.77□□□□□ -0.52
USP47-202ENST00000339865 HTR1FP30939 366 aa11.77□□□□□ -0.52
USP47-202ENST00000339865 RPS16P62249 146 aaKnown RBP11.77□□□□□ -0.52
USP47-202ENST00000339865 UCN3Q969E3 161 aa11.77□□□□□ -0.52
USP47-202ENST00000339865 SLC22A12Q96S37 553 aa11.77□□□□□ -0.52
USP47-202ENST00000339865 WDR83Q9BRX9 315 aaKnown RBP11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 114.3 ms