RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 BPNT1O95861 308 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 FBLP22087 321 aaKnown RBP13.94□□□□□ -0.18
SHH-201ENST00000297261 DAP3P51398 398 aaKnown RBP13.94□□□□□ -0.18
SHH-201ENST00000297261 MPEG1Q2M385 716 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 LDAHQ9H6V9 325 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 PTPRDP23468 1912 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 A0A1W2PPC4 97 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 THSD4Q6ZMP0 1018 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 MED25Q71SY5 747 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 HPSE2Q8WWQ2 592 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 SDHCQ99643 169 aaPredicted RBP13.94□□□□□ -0.18
SHH-201ENST00000297261 OR52A1Q9UKL2 312 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 C19orf53Q9UNZ5 99 aaPredicted RBP13.94□□□□□ -0.18
SHH-201ENST00000297261 SIT1Q9Y3P8 196 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 NAT2P11245 290 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 HRH1P35367 487 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 CCR5P51681 352 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 FAM69BQ5VUD6 431 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 GLIPR1L1Q6UWM5 242 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 SPICQ8N5J4 248 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 SFT2D1Q8WV19 159 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 PIGQQ9BRB3 760 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 DAPP1Q9UN19 280 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 MTCH2Q9Y6C9 303 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 OR5K3A6NET4 321 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 SPINT1O43278 529 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 LILRB5O75023 590 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 ZNF626Q68DY1 528 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 TMEM91Q6ZNR0 172 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 CMTM1Q8IZ96 169 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 OR56B2PQ8NGI1 322 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 OR5B2Q96R09 309 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 OR5V1Q9UGF6 321 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 GPR160Q9UJ42 338 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 CABIN1Q9Y6J0 2220 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 A0A1W2PQF6 199 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 C7orf66A4D0T2 115 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 HEXBP07686 556 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 PTAFRP25105 342 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 FCGR2CP31995 323 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 PHLDA2Q53GA4 152 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 DCXRQ7Z4W1 244 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 PRR18Q8N4B5 295 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 OR11H4Q8NGC9 324 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 GHITMQ9H3K2 345 aa13.93□□□□□ -0.18
SHH-201ENST00000297261 MBTPS2O43462 519 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 LRP3O75074 770 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 POU3F2P20265 443 aaPredicted RBP13.92□□□□□ -0.18
SHH-201ENST00000297261 ATP1B3P54709 279 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 ZP2Q05996 745 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 MFGE8Q08431 387 aaPredicted RBP13.92□□□□□ -0.18
SHH-201ENST00000297261 OGFOD3Q6PK18 319 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 CLEC9AQ6UXN8 241 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 OR5M9Q8NGP3 310 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 WDR34Q96EX3 536 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 NPAS1Q99742 590 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 GPA33Q99795 319 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 KCND3Q9UK17 655 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 FGF17O60258 216 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 DBHP09172 617 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 HOXB3P14651 431 aaPredicted RBP13.92□□□□□ -0.18
SHH-201ENST00000297261 GALP22466 123 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 DHRS2Q13268 280 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 ZNF273Q14593 569 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 NKAIN2Q5VXU1 208 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 RAET1LQ5VY80 246 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 LYSMD4Q5XG99 296 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 FAM174AQ8TBP5 190 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 DEFB126Q9BYW3 111 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 KCNG2Q9UJ96 466 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 SIGLEC7Q9Y286 467 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 LOC107986453A0A1B0GWG9 222 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 PRAMEF27A3QJZ7 478 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 MSTNO14793 375 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 GLSO94925 669 aaPredicted RBP13.92□□□□□ -0.18
SHH-201ENST00000297261 TSFMP43897 325 aaKnown RBP13.92□□□□□ -0.18
SHH-201ENST00000297261 RPL23AP62750 156 aaKnown RBP13.92□□□□□ -0.18
SHH-201ENST00000297261 DOC2BQ14184 412 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 LPAL2Q16609 132 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 DMRTC1Q5HYR2 192 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 SLC25A31Q9H0C2 315 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 SEMA6CQ9H3T2 930 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 C1orf198Q9H425 327 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 KLHL13Q9P2N7 655 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 MTFP1Q9UDX5 166 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 COA3Q9Y2R0 106 aaPredicted RBP13.92□□□□□ -0.18
SHH-201ENST00000297261 PCDHGA1Q9Y5H4 931 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 A0A1B0GTH9 108 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 RNASEK-C17orf49H0YIS7 233 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 CD37P11049 281 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 HAGHQ16775 308 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 ZXDCQ2QGD7 858 aaPredicted RBP13.92□□□□□ -0.18
SHH-201ENST00000297261 LYG2Q86SG7 212 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 FAM86C1Q9NVL1 165 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 OPN4Q9UHM6 478 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 GAB2Q9UQC2 676 aa13.92□□□□□ -0.18
SHH-201ENST00000297261 SERTM1A2A2V5 107 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 NUDT19A8MXV4 375 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 JTBO76095 146 aa13.91□□□□□ -0.18
SHH-201ENST00000297261 CD300LDQ6UXZ3 194 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms