RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SYNPRQ8TBG9 265 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 OSBPL10Q9BXB5 764 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 KRT84Q9NSB2 600 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 A8MV72 311 aaPredicted RBP16.47■□□□□ 0.23
CLN3-260ENST00000637578 EI24O14681 340 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 IMPA2O14732 288 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 LCKP06239 509 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 HIST1H1CP16403 213 aaKnown RBP16.47■□□□□ 0.23
CLN3-260ENST00000637578 IGFBP5P24593 272 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 NOS3P29474 1203 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 KLF3P57682 345 aaPredicted RBP16.47■□□□□ 0.23
CLN3-260ENST00000637578 GGTLC2Q14390 218 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 CARTPTQ16568 116 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 ELFN2Q5R3F8 820 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 SLC35F1Q5T1Q4 408 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 CYB5R2Q6BCY4 276 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 UGT2A3Q6UWM9 527 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 PTCHD4Q6ZW05 846 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 ZNF101Q8IZC7 436 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 LNX2Q8N448 690 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 CBR4Q8N4T8 237 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 OR2T33Q8NG76 320 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 RBM4BQ9BQ04 359 aaKnown RBP16.47■□□□□ 0.23
CLN3-260ENST00000637578 RBM4Q9BWF3 364 aaKnown RBP16.47■□□□□ 0.23
CLN3-260ENST00000637578 SYT4Q9H2B2 425 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 C5orf49A4QMS7 147 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 H0YHG0 523 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 IDH3BO43837 385 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 IGHV3-13P01766 116 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 TACSTD2P09758 323 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 COX5BP10606 129 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 CDKN2AP42771 156 aaKnown RBP16.46■□□□□ 0.23
CLN3-260ENST00000637578 GDI2P50395 445 aaKnown RBP16.46■□□□□ 0.23
CLN3-260ENST00000637578 SELENOVP59797 346 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 MRPS11P82912 194 aaKnown RBP16.46■□□□□ 0.23
CLN3-260ENST00000637578 ZNF774Q6NX45 483 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 C1orf174Q8IYL3 243 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 OR4K13Q8NH42 304 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 MARS2Q96GW9 593 aaKnown RBP16.46■□□□□ 0.23
CLN3-260ENST00000637578 OR51B6Q9H340 312 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 EMC7Q9NPA0 242 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 TMEM160Q9NX00 188 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 SLCO1C1Q9NYB5 712 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 TAAR3PQ9P1P4 343 aa16.46■□□□□ 0.23
CLN3-260ENST00000637578 A0A1W2PPW3 197 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 SLC16A7O60669 478 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 KHDRBS3O75525 346 aaKnown RBP16.45■□□□□ 0.22
CLN3-260ENST00000637578 HPXP02790 462 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 ALPLP05186 524 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 NAT2P11245 290 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 CCNOP22674 350 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 GZMKP49863 264 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 LSM6P62312 80 aaKnown RBP16.45■□□□□ 0.22
CLN3-260ENST00000637578 KCNMB1Q16558 191 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 GLB1L2Q8IW92 636 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 OR1J1Q8NGS3 322 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 EME1Q96AY2 570 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 C9orf16Q9BUW7 83 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 NUAK2Q9H093 628 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 DCLRE1BQ9H816 532 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 EIF3KQ9UBQ5 218 aaKnown RBP16.45■□□□□ 0.22
CLN3-260ENST00000637578 GPR160Q9UJ42 338 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 BAIAP2Q9UQB8 552 aa16.45■□□□□ 0.22
CLN3-260ENST00000637578 C17orf100A8MU93 164 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 LYNX1G3V0Z9 82 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 LILRA1O75019 489 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 LYNX1P0DP58 116 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 CRISP1P54107 249 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 GINS1Q14691 196 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 TRIP10Q15642 601 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 MOGQ16653 247 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 MBNL2Q5VZF2 373 aaKnown RBP16.44■□□□□ 0.22
CLN3-260ENST00000637578 SLC27A4Q6P1M0 643 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 UNQ6126/PRO20091Q6UXV3 157 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 JAZF1Q86VZ6 243 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 SDR9C7Q8NEX9 313 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 SNX18Q96RF0 628 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 NMNAT3Q96T66 252 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 SLC29A1Q99808 456 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 HINT3Q9NQE9 182 aaKnown RBP16.44■□□□□ 0.22
CLN3-260ENST00000637578 NKIRAS2Q9NYR9 191 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 USE1Q9NZ43 259 aa16.44■□□□□ 0.22
CLN3-260ENST00000637578 COA3Q9Y2R0 106 aaPredicted RBP16.44■□□□□ 0.22
CLN3-260ENST00000637578 NCR1O76036 304 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 COL8A2P25067 703 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 EPHA2P29317 976 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 ALDH3A2P51648 485 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 ESRRGP62508 458 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.43■□□□□ 0.22
CLN3-260ENST00000637578 SCRN3Q0VDG4 424 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 NKPD1Q17RQ9 610 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 TMEM255AQ5JRV8 349 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 TMEM236Q5W0B7 351 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 ACSM5Q6NUN0 579 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 LEG1Q6P5S2 330 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 ZBTB49Q6ZSB9 765 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 OR52E2Q8NGJ4 325 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 RDH5Q92781 318 aa16.43■□□□□ 0.22
CLN3-260ENST00000637578 NKX1-2Q9UD57 310 aaPredicted RBP16.43■□□□□ 0.22
CLN3-260ENST00000637578 NDRG4Q9ULP0 352 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms