RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CACNA1CQ13936 2221 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 DCDC2BA2VCK2 349 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 RFPL4AA6NLU0 287 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 NPIPA5E9PKD4 350 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 RFPL4AL1F8VTS6 287 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 ZNF208O43345 1280 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 MPZP25189 248 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 SPOCK1Q08629 439 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 LY6G6FQ5SQ64 297 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 GSG1LQ6UXU4 331 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 KDM8Q8N371 416 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 C12orf45Q8N5I9 185 aaPredicted RBP11.41□□□□□ -0.58
LINC00540-203ENST00000631321 OR6K3Q8NGY3 331 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 RNF138Q8WVD3 245 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 AQP3Q92482 292 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 NPAS1Q99742 590 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 CMKLR1Q99788 373 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 TINAGL1Q9GZM7 467 aaPredicted RBP11.41□□□□□ -0.58
LINC00540-203ENST00000631321 SLC22A11Q9NSA0 550 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 KLHL13Q9P2N7 655 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 NPIPA1Q9UND3 350 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 IGKV1D-43A0A0B4J1Z2 117 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 A0A1B0GTI1 187 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 TMEM269A0A1B0GVZ9 245 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 ZNF736B4DX44 427 aaPredicted RBP11.4□□□□□ -0.58
LINC00540-203ENST00000631321 CYB5AP00167 134 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 NAGAP17050 411 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 FMODQ06828 376 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 C17orf67Q0P5P2 114 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 GK2Q14410 553 aaPredicted RBP11.4□□□□□ -0.58
LINC00540-203ENST00000631321 UBXN2BQ14CS0 331 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 NR0B2Q15466 257 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 ATPAF1Q5TC12 328 aaPredicted RBP11.4□□□□□ -0.58
LINC00540-203ENST00000631321 RAB12Q6IQ22 244 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 JAGN1Q8N5M9 183 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 ARL5BQ96KC2 179 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 CHST11Q9NPF2 352 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 SLC2A8Q9NY64 477 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 KLK13Q9UKR3 277 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 TRAV14DV4A0A0A6YYC5 116 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 M0QYG6 137 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 CD8AP01732 235 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 AMY2AP04746 511 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 FCER2P06734 321 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 HSD11B1P28845 292 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 MPGP29372 298 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 GPR85P60893 370 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 HSF1Q00613 529 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 OR7A5Q15622 319 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 MOGAT2Q3SYC2 334 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 CLVS2Q5SYC1 327 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 LRFN4Q6PJG9 635 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 APCDD1LQ8NCL9 501 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 NFAM1Q8NET5 270 aaPredicted RBP11.4□□□□□ -0.58
LINC00540-203ENST00000631321 OR4D6Q8NGJ1 314 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 FGF21Q9NSA1 209 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 FAM206AQ9NX38 181 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 PISDQ9UG56 409 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 GDF2Q9UK05 429 aaPredicted RBP11.4□□□□□ -0.58
LINC00540-203ENST00000631321 RAB22AQ9UL26 194 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 MTCH2Q9Y6C9 303 aa11.4□□□□□ -0.58
LINC00540-203ENST00000631321 RP1P56715 2156 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 IGLV3-12A0A075B6K2 115 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 A8MXK9 166 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 LMX1BO60663 402 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 ALOX12BO75342 701 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 GLB1P16278 677 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 MEF2DQ14814 521 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF260Q3ZCT1 412 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF660Q6AZW8 331 aaPredicted RBP11.39□□□□□ -0.59
LINC00540-203ENST00000631321 LPCAT3Q6P1A2 487 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 C11orf88Q6PI97 169 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 WDR74Q6RFH5 385 aaPredicted RBP11.39□□□□□ -0.59
LINC00540-203ENST00000631321 ALKAL2Q6UX46 152 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF813Q6ZN06 617 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 SLC51BQ86UW2 128 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 LINC00346Q8IVM7 164 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 OR13C8Q8NGS7 320 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 NUBPLQ8TB37 319 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 CXorf58Q96LI9 332 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 SUSD2Q9UGT4 822 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 LOC101059948A0A1B0GTJ6 334 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 A0A1W2PNV4 684 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 CPED1A4D0V7 1026 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 WIPF3A6NGB9 483 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 LIPT2A6NK58 231 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 RAB27BO00194 218 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 P2RY10O00398 339 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 ZNF354AO60765 605 aaPredicted RBP11.39□□□□□ -0.59
LINC00540-203ENST00000631321 H2BFMP0C1H6 154 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 FOSL2P15408 326 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 FBXW4P57775 412 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 QRFPP83859 136 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 SORDQ00796 357 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 OR10K2Q6IF99 312 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 OVCH2Q7RTZ1 564 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 BPIFB2Q8N4F0 458 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 OR5M9Q8NGP3 310 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 DDIT4LQ96D03 193 aa11.39□□□□□ -0.59
LINC00540-203ENST00000631321 SLC6A7Q99884 636 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms