RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 SYS1Q8N2H4 156 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 SIGLEC11Q96RL6 698 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 CMSS1Q9BQ75 279 aaKnown RBP8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 ABHD6Q9BV23 337 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 SHPKQ9UHJ6 478 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 HIF3AQ9Y2N7 669 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 PCDHGA5Q9Y5G8 931 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 THBS2P35442 1172 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 DMWDQ09019 674 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 VHLLQ6RSH7 139 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 ZNF767PQ75MW2 155 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 SGPP2Q8IWX5 399 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 C9orf40Q8IXQ3 194 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 OR52N5Q8NH56 324 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 SLC19A3Q9BZV2 496 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 SLCO1B1Q9Y6L6 691 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 FNDC1Q4ZHG4 1894 aaPredicted RBP8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 SSX5O60225 188 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 IGHEP01854 428 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 CT45A8P0DMV1 189 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 CT45A9P0DMV2 189 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 CD46P15529 392 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 AGTR1P30556 359 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 ATP1B3P54709 279 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 CT45A2Q5DJT8 189 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 SULF2Q8IWU5 870 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 TM4SF19Q96DZ7 209 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 MVB12AQ96EY5 273 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 MIXL1Q9H2W2 232 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 OBP2BQ9NPH6 170 aa8.05□□□□□ -1.12
PDLIM5-222ENST00000615540 SCN3AQ9NY46 2000 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 FAM221AA4D161 298 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 C17orf51A8MQB3 221 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 ACHEP22303 614 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 SELENBP1Q13228 472 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 THEM4Q5T1C6 240 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 ZNF684Q5T5D7 378 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 ZNF770Q6IQ21 691 aaPredicted RBP8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 C17orf107Q6ZR85 190 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 PCOLCE2Q9UKZ9 415 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 MASP2O00187 686 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 SPRY1O43609 319 aaPredicted RBP8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 CD3DP04234 171 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 B4GALT1P15291 398 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 CCR9P51686 369 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 IKZF1Q13422 519 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 AADACL4Q5VUY2 407 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 VASH2Q86V25 355 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 GRAMD2AQ8IUY3 354 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 OTOSQ8NHW6 89 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 NUDCD2Q8WVJ2 157 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 C11orf40Q8WZ69 217 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 PTP4A1Q93096 173 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 TMEM272A0A1B0GTI8 110 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 GABARAPH6UMI1 98 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 GPR171O14626 319 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 TAS2R31P59538 309 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 GRB2P62993 217 aaKnown RBP8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 BAMBIQ13145 260 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 FAM71CQ8NEG0 241 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 STK35Q8TDR2 534 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 ARL5BQ96KC2 179 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 LRFN5Q96NI6 719 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 OXGR1Q96P68 337 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 WNT16Q9UBV4 365 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 GLS2Q9UI32 602 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 RAB22AQ9UL26 194 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 TMEM184BQ9Y519 407 aaPredicted RBP8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 CXCL13O43927 109 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 TNFSF15O95150 251 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 MSR1P21757 451 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 SLC37A1P57057 533 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 RHOUQ7L0Q8 258 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 ZNF546Q86UE3 836 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 LIX1LQ8IVB5 337 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 ZSCAN4Q8NAM6 433 aaPredicted RBP8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 OR4S1Q8NGB4 309 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 OR56B1Q8NGI3 324 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 TCEAL3Q969E4 200 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 CMBLQ96DG6 245 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 SIRT4Q9Y6E7 314 aaPredicted RBP8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 NUPL2O15504 423 aaKnown RBP8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 GABRB1P18505 474 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 OPCMLQ14982 345 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 COL13A1Q5TAT6 717 aaPredicted RBP8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 PGAP1Q75T13 922 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 OR6M1Q8NGM8 313 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 ZNF721Q8TF20 911 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 ST8SIA1Q92185 356 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 PRSS27Q9BQR3 290 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 KCNE5Q9UJ90 142 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 KLHDC2Q9Y2U9 406 aa8.04□□□□□ -1.12
PDLIM5-222ENST00000615540 ANKRD33BA6NCL7 494 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 PLPP3O14495 311 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 SGCEO43556 437 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 PLPP2O43688 288 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 S100A6P06703 90 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 LPLP06858 475 aa8.03□□□□□ -1.12
PDLIM5-222ENST00000615540 CRYBA2P53672 197 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms