RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 INTS14Q96SY0 518 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 CSTL1Q9H114 145 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 POFUT1Q9H488 388 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 MSL2Q9HCI7 577 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.24□□□□□ -0.93
VPS39-214ENST00000614932 PARP11Q9NR21 331 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 VPS29Q9UBQ0 182 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 ZNF282Q9UDV7 671 aaPredicted RBP9.24□□□□□ -0.93
VPS39-214ENST00000614932 PITPNC1Q9UKF7 332 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 FOXJ3Q9UPW0 622 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 NPC1O15118 1278 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 PIAS2O75928 621 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 IGHEP01854 428 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 CATP04040 527 aaKnown RBP9.24□□□□□ -0.93
VPS39-214ENST00000614932 ERCC1P07992 297 aaPredicted RBP9.24□□□□□ -0.93
VPS39-214ENST00000614932 OR5AC1P0C628 307 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 AKT2P31751 481 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 NOVA1P51513 510 aaKnown RBP9.24□□□□□ -0.93
VPS39-214ENST00000614932 TBPL1P62380 186 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 PAX5Q02548 391 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 GPM6BQ13491 265 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 PCGF3Q3KNV8 242 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 GALNTL5Q7Z4T8 443 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 LHFPL4Q7Z7J7 247 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 GALNT16Q8N428 558 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 CD300LFQ8TDQ1 290 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 NUS1Q96E22 293 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 BOD1Q96IK1 185 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 ELOVL1Q9BW60 279 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 LGR4Q9BXB1 951 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 METTL8Q9H825 291 aaKnown RBP9.24□□□□□ -0.93
VPS39-214ENST00000614932 DYRK1BQ9Y463 629 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 DOCK9Q9BZ29 2069 aa9.24□□□□□ -0.93
VPS39-214ENST00000614932 MBPP02686 304 aaPredicted RBP9.23□□□□□ -0.93
VPS39-214ENST00000614932 MT-ND5P03915 603 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 TK1P04183 234 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 CXCL1P09341 107 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ANXA4P09525 319 aaPredicted RBP9.23□□□□□ -0.93
VPS39-214ENST00000614932 CD34P28906 385 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 PDX1P52945 283 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 PTTG1IPP53801 180 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 PCBP3P57721 371 aaKnown RBP9.23□□□□□ -0.93
VPS39-214ENST00000614932 BTG2P78543 158 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 SYPL1Q16563 259 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 C1orf194Q5T5A4 169 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 TANGO2Q6ICL3 276 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 TCTN3Q6NUS6 607 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 TEX38Q6PEX7 206 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ZNF705AQ6ZN79 300 aaPredicted RBP9.23□□□□□ -0.93
VPS39-214ENST00000614932 TMED4Q7Z7H5 227 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ZNF547Q8IVP9 402 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ABHD5Q8WTS1 349 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 Q8WTZ3 238 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 SMAD5Q99717 465 aaKnown RBP9.23□□□□□ -0.93
VPS39-214ENST00000614932 PLA2G12AQ9BZM1 189 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 UPB1Q9UBR1 384 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ANGPT4Q9Y264 503 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 CCDC88CQ9P219 2028 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 KCNAB3O43448 404 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ALOX12BO75342 701 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 AHSA1O95433 338 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 AMBPP02760 352 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 OPN1MWP04001 364 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 OR4A8P0C604 315 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 OPN1MW2P0DN77 364 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 OPN1MW3P0DN78 364 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 SLC6A9P48067 706 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 PRLHRP49683 370 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 SEC13P55735 322 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ELOBQ15370 118 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 NKAIN1Q4KMZ8 207 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 TMEM183AQ8IXX5 376 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ACBD7Q8N6N7 88 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 OR5AR1Q8NGP9 310 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 OR5AK3PQ8NH89 298 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 APOBEC4Q8WW27 367 aaKnown RBP9.23□□□□□ -0.93
VPS39-214ENST00000614932 FRZBQ92765 325 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 SYT3Q9BQG1 590 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 VPS25Q9BRG1 176 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 GPR87Q9BY21 358 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 MFRPQ9BY79 579 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 BRF2Q9HAW0 419 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 SEMA4GQ9NTN9 838 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 TAS2R8Q9NYW2 309 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 FOXJ2Q9P0K8 574 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 LRFN1Q9P244 771 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 PADI1Q9ULC6 663 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 RNF24Q9Y225 148 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 AK6Q9Y3D8 172 aaKnown RBP9.23□□□□□ -0.93
VPS39-214ENST00000614932 OR1A2Q9Y585 309 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 HS3ST3B1Q9Y662 390 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 COLEC10Q9Y6Z7 277 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 NUMA1Q14980 2115 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 LOC100509620A0A075B734 347 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 CCSO14618 274 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 C1orf105O95561 183 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 RPN2P04844 631 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 CSF1P09603 554 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 OR8U9P0C7N5 309 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 RAB6AP20340 208 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms