RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 CREB3L2Q70SY1 520 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 OR13C3Q8NGS6 347 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 S100A16Q96FQ6 103 aaKnown RBP12.83□□□□□ -0.36
VRK3-217ENST00000599538 CGGBP1Q9UFW8 167 aaPredicted RBP12.83□□□□□ -0.36
VRK3-217ENST00000599538 HHLA2Q9UM44 414 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 KDM4BO94953 1096 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 CD63P08962 238 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 ACSM4P0C7M7 580 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 SLC2A1P11166 492 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 FKBP2P26885 142 aaKnown RBP12.82□□□□□ -0.36
VRK3-217ENST00000599538 GIFP27352 417 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 POU3F4P49335 361 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 STARP49675 285 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 MMP16P51512 607 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 CD83Q01151 205 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 SPEM2Q0P670 501 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 TMEM69Q5SWH9 247 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 SPINK14Q6IE38 97 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 FAM166AQ6J272 317 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 THOC3Q96J01 351 aaKnown RBP12.82□□□□□ -0.36
VRK3-217ENST00000599538 SOX7Q9BT81 388 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 NEK6Q9HC98 313 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 NUDT15Q9NV35 164 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 POLR1DQ9Y2S0 133 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 TERTO14746 1132 aaKnown RBP12.82□□□□□ -0.36
VRK3-217ENST00000599538 WDPCPO95876 746 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 ISG15P05161 165 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 ZNF806P0C7X5 589 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 ARSBP15848 533 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 PRKXP51817 358 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 TAS2R20P59543 309 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 RAC1P63000 192 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 OC90Q02509 493 aaPredicted RBP12.82□□□□□ -0.36
VRK3-217ENST00000599538 SPOCK1Q08629 439 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 C2orf76Q3KRA6 126 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 HES3Q5TGS1 186 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 BAIAP2L2Q6UXY1 529 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 ZIC4Q8N9L1 334 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 PNRC2Q9NPJ4 139 aaKnown RBP12.82□□□□□ -0.36
VRK3-217ENST00000599538 GLTPQ9NZD2 209 aa12.82□□□□□ -0.36
VRK3-217ENST00000599538 CCDC187A0A096LP49 1063 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 DCDC2BA2VCK2 349 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 GMDSO60547 372 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 HLA-DMAP28067 261 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 NTF4P34130 210 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 SELENOPP49908 381 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 WIPI1Q5MNZ9 446 aaPredicted RBP12.81□□□□□ -0.36
VRK3-217ENST00000599538 BCL2L15Q5TBC7 163 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 OR14L1PQ8NHC6 308 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 RAB40AQ8WXH6 277 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 SLC25A28Q96A46 364 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 CREB3L1Q96BA8 519 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 ZNF837Q96EG3 531 aaPredicted RBP12.81□□□□□ -0.36
VRK3-217ENST00000599538 OR2M2Q96R28 347 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 PIGQQ9BRB3 760 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 PBOV1Q9GZY1 135 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 STMN3Q9NZ72 180 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 ZNF319Q9P2F9 582 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 IL17BQ9UHF5 180 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 RCE1Q9Y256 329 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 RBMX2Q9Y388 322 aaKnown RBP12.81□□□□□ -0.36
VRK3-217ENST00000599538 ETV7Q9Y603 341 aa12.81□□□□□ -0.36
VRK3-217ENST00000599538 GABARAPH6UMI1 98 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 SLC17A2O00624 439 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 SMAD9O15198 467 aaKnown RBP12.8□□□□□ -0.36
VRK3-217ENST00000599538 TCRBP04435 133 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 CD2P06729 351 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 ZNF17P17021 662 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 ACHEP22303 614 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 SRD5A2P31213 254 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 GLYATL3Q5SZD4 288 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 HACD4Q5VWC8 232 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 FAAP20Q6NZ36 180 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 OR9K2Q8NGE7 335 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 FAM3DQ96BQ1 224 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 FGGYQ96C11 551 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 GAL3ST1Q99999 423 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 MRI1Q9BV20 369 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 TMEM9BQ9NQ34 198 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 MYEF2Q9P2K5 600 aaKnown RBP12.8□□□□□ -0.36
VRK3-217ENST00000599538 ASPMQ8IZT6 3477 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 OTOGLQ3ZCN5 2332 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 C5orf63A6NC05 138 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 TMEM127O75204 238 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 CTAG2O75638 210 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 TRAPPC2P0DI81 140 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 TRAPPC2BP0DI82 140 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 FSTP19883 344 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 CFPP27918 469 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 RFC3P40938 356 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 CYB561P49447 251 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 SUCLG1P53597 346 aaKnown RBP12.8□□□□□ -0.36
VRK3-217ENST00000599538 CLDN15P56746 228 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 GABREP78334 506 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 SNTB2Q13425 540 aaKnown RBP12.8□□□□□ -0.36
VRK3-217ENST00000599538 RAB11BQ15907 218 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 SGCAQ16586 387 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 ZNF704Q6ZNC4 412 aaPredicted RBP12.8□□□□□ -0.36
VRK3-217ENST00000599538 GGNQ86UU5 652 aa12.8□□□□□ -0.36
VRK3-217ENST00000599538 ELMOD2Q8IZ81 293 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms