RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TPSD1Q9BZJ3 242 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 DNTTIP1Q9H147 329 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 C2orf16Q68DN1 1984 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 GPR31O00270 319 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 P2RY10O00398 339 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 BET1O15155 118 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 F12P00748 615 aaPredicted RBP13.74□□□□□ -0.21
UPF1-204ENST00000596842 DLSTP36957 453 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 RAB13P51153 203 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 RPS4XP62701 263 aaKnown RBP13.74□□□□□ -0.21
UPF1-204ENST00000596842 TSC22D1Q15714 1073 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 ZNF684Q5T5D7 378 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 OTOSQ8NHW6 89 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 DPYSL5Q9BPU6 564 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 NUDT22Q9BRQ3 303 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 MTIF3Q9H2K0 278 aaKnown RBP13.74□□□□□ -0.21
UPF1-204ENST00000596842 PRODH2Q9UF12 536 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 H0YIG0 161 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 ZNF117Q03924 483 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 SLC17A1Q14916 467 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 VWA2Q5GFL6 755 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 RBMS3Q6XE24 437 aaKnown RBP13.74□□□□□ -0.21
UPF1-204ENST00000596842 CMTM3Q96MX0 182 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 PRR13Q9NZ81 148 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 UPB1Q9UBR1 384 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 MRPS18BQ9Y676 258 aaKnown RBP13.74□□□□□ -0.21
UPF1-204ENST00000596842 LTBP2Q14767 1821 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 SDK2Q58EX2 2172 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 OR5K4A6NMS3 321 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 NPIPB9F8W1W9 429 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 HLA-DOBP13765 273 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 ZNF823P16415 610 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 ACTBP60709 375 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 ACTG1P63261 375 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 NR0B2Q15466 257 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 TMEM225Q6GV28 225 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 ALKBH2Q6NS38 261 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 ZBTB8AQ96BR9 441 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 VDAC3Q9Y277 283 aa13.74□□□□□ -0.21
UPF1-204ENST00000596842 TRBV5-5A0A0J9YX44 114 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 OR14I1A6ND48 311 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 HTR3BO95264 441 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 ITGA3P26006 1051 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 CD1CP29017 333 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 ATP1B3P54709 279 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 FBXW4P57775 412 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 TAS2R19P59542 299 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 DHRS2Q13268 280 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 SKP2Q13309 424 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 IL10RAQ13651 578 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 EXOSC6Q5RKV6 272 aaKnown RBP13.73□□□□□ -0.21
UPF1-204ENST00000596842 ZNF595Q8IYB9 648 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 RNASE11Q8TAA1 199 aaKnown RBP13.73□□□□□ -0.21
UPF1-204ENST00000596842 PPP1R1CQ8WVI7 109 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 ABHD6Q9BV23 337 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 EMC6Q9BV81 110 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 WDR13Q9H1Z4 485 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 OR2S2Q9NQN1 319 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 IGHV3-20A0A0C4DH32 117 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 TMEM150CB9EJG8 249 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 PI3P19957 117 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 SGCAQ16586 387 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 RNASE10Q5GAN6 216 aaKnown RBP13.73□□□□□ -0.21
UPF1-204ENST00000596842 OR5M9Q8NGP3 310 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 SGK3Q96BR1 496 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 SEH1LQ96EE3 360 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 LCORQ96JN0 433 aaPredicted RBP13.73□□□□□ -0.21
UPF1-204ENST00000596842 SLC41A2Q96JW4 573 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 LRFN5Q96NI6 719 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 MRI1Q9BV20 369 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 LOC101059948A0A1B0GTJ6 334 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 H3BML4 177 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 SLC2A1P11166 492 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 PLCXD2Q0VAA5 305 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 PDZK1IP1Q13113 114 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 LMX1AQ8TE12 382 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 C5orf34Q96MH7 638 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 POLR1DQ9Y2S0 133 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 ABCA7Q8IZY2 2146 aa13.73□□□□□ -0.21
UPF1-204ENST00000596842 SLC17A2O00624 439 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 IFNA6P05013 189 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 ASAH2BP0C7U1 165 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 GP1BBP13224 206 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 IL11P20809 199 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 TNFRSF4P43489 277 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 CASP6P55212 293 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 IL13RA1P78552 427 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 DLX2Q07687 328 aaPredicted RBP13.72□□□□□ -0.21
UPF1-204ENST00000596842 NSDHLQ15738 373 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 PDZD11Q5EBL8 140 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 EEF1A1P5Q5VTE0 462 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 ZNF101Q8IZC7 436 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 CLEC1AQ8NC01 280 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 PMM1Q92871 262 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 ZNF587Q96SQ5 575 aaPredicted RBP13.72□□□□□ -0.21
UPF1-204ENST00000596842 UFSP2Q9NUQ7 469 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 OBP2AQ9NY56 170 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 LRP12Q9Y561 859 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 A0A1B0GV90 55 aa13.72□□□□□ -0.21
UPF1-204ENST00000596842 TMEM269A0A1B0GVZ9 245 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms