RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 SUCLG1P53597 346 aaKnown RBP11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 AP2S1P53680 142 aaPredicted RBP11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 GPR176Q14439 515 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ETFDHQ16134 617 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SLC16A9Q7RTY1 509 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 DPY19L4Q7Z388 723 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 PXKQ7Z7A4 578 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 TMEM251Q8N6I4 163 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ZNF433Q8N7K0 673 aaPredicted RBP11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 DUSP18Q8NEJ0 188 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 WDR76Q9H967 626 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 BRD7Q9NPI1 651 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 MRPL39Q9NYK5 338 aaKnown RBP11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 PRELID1Q9Y255 219 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 RTTNQ86VV8 2226 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 BSNQ9UPA5 3926 aa11.3□□□□□ -0.6
CDK5RAP3-217ENST00000580287 DNAJC13O75165 2243 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 A0A087WZY1 265 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 B8ZZF3 427 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SC5DO75845 299 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 APEHP13798 732 aaKnown RBP11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ATF1P18846 271 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 CLDN15P56746 228 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 CLDN12P56749 244 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 RRAS2P62070 204 aaPredicted RBP11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 PLGLB1Q02325 96 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SRYQ05066 204 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 HSD17B12Q53GQ0 312 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ZNF766Q5HY98 468 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 TOR2AQ5JU69 321 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 MZT2BQ6NZ67 158 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 IDO2Q6ZQW0 420 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 TMPPEQ6ZT21 453 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 LRRC28Q86X40 367 aaPredicted RBP11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ZNF248Q8NDW4 579 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 HAS2Q92819 552 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 KCNJ15Q99712 375 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 PIGQQ9BRB3 760 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 THAP7Q9BT49 309 aaPredicted RBP11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 TRAF4Q9BUZ4 470 aaPredicted RBP11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 POTEKPQ9BYX7 375 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ABCG5Q9H222 651 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SLC6A15Q9H2J7 730 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ZNF703Q9H7S9 590 aaPredicted RBP11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 CHST11Q9NPF2 352 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 B3GAT1Q9P2W7 334 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 A0A1B0GTH9 108 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 EIF1AYO14602 144 aaKnown RBP11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 PTHLHP12272 177 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 RAC2P15153 192 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 TNFSF10P50591 281 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 P2RY4P51582 365 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SLC25A1P53007 311 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SOX8P57073 446 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 NANOS3P60323 173 aaKnown RBP11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 BCL2L15Q5TBC7 163 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 METAP1DQ6UB28 335 aaPredicted RBP11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 C9orf62Q8N4C0 152 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ZNF671Q8TAW3 534 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 DERL3Q96Q80 235 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 DEFB127Q9H1M4 99 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 NOX4Q9NPH5 578 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 BOKQ9UMX3 212 aaPredicted RBP11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 MOKQ9UQ07 419 aa11.29□□□□□ -0.6
CDK5RAP3-217ENST00000580287 NME2P1O60361 137 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ZFPL1O95159 310 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ARSBP15848 533 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ATF4P18848 351 aaPredicted RBP11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 NME2P22392 152 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SOX2P48431 317 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 RPS11P62280 158 aaKnown RBP eCLIP11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 DGCR2P98153 550 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 MAB21L1Q13394 359 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 C3AR1Q16581 482 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 LIPNQ5VXI9 398 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 GPR139Q6DWJ6 353 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 TMEM225Q6GV28 225 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SERPINA12Q8IW75 414 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 BEST4Q8NFU0 473 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 NKX3-1Q99801 234 aaPredicted RBP11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SRXN1Q9BYN0 137 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 B3GNT2Q9NY97 397 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 VSTM5A8MXK1 200 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 INMT-MINDY4F8WBC2 141 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 TSC22D2O75157 780 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 PDGFAP04085 211 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 TACSTD2P09758 323 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 CD46P15529 392 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 CCR6P51684 374 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 RAC1P63000 192 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 HSF2Q03933 536 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 FMODQ06828 376 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 EMC4Q5J8M3 183 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 LRRC69Q6ZNQ3 347 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SLC35D2Q76EJ3 337 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SPACA3Q8IXA5 215 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 SNIP1Q8TAD8 396 aaKnown RBP11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 MIB2Q96AX9 1013 aa11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 KCTD12Q96CX2 325 aaKnown RBP11.28□□□□□ -0.6
CDK5RAP3-217ENST00000580287 ZNF845Q96IR2 970 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms