RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CLINT1Q14677 625 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 KRTAP13-4Q3LI77 160 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 CEP55Q53EZ4 464 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 ANKRD26P1Q6NSI1 321 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 SASS6Q6UVJ0 657 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 EID2Q8N6I1 236 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 PIFOQ8TCI5 191 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 PIK3IP1Q96FE7 263 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 CNDP1Q96KN2 507 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 SERPINB12Q96P63 405 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 TM2D3Q9BRN9 247 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 FGF23Q9GZV9 251 aaPredicted RBP1.13□□□□□ -2.23
VPS35-207ENST00000568191 NT5C3AQ9H0P0 336 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 CHMP4BQ9H444 224 aaKnown RBP1.13□□□□□ -2.23
VPS35-207ENST00000568191 FGF20Q9NP95 211 aaPredicted RBP1.13□□□□□ -2.23
VPS35-207ENST00000568191 NT5MQ9NPB1 228 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 DHCR7Q9UBM7 475 aaKnown RBP1.13□□□□□ -2.23
VPS35-207ENST00000568191 EXTL2Q9UBQ6 330 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 HPCAL4Q9UM19 191 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 MYO16Q9Y6X6 1858 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 EIF4G1Q04637 1599 aaKnown RBP1.13□□□□□ -2.23
VPS35-207ENST00000568191 AHDC1Q5TGY3 1603 aaPredicted RBP1.12□□□□□ -2.23
VPS35-207ENST00000568191 CLRN2A0PK11 232 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 FAM47DPA6NHR8 397 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 OR52A4PA6NMU1 304 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 BOLA2-SMG1P6H3BVE0 249 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 AP3B1O00203 1094 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 SOCS1O15524 211 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 KLHL41O60662 606 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 PALMO75781 387 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 IGLV3-25P01717 112 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 EIF4EP06730 217 aaKnown RBP1.12□□□□□ -2.23
VPS35-207ENST00000568191 ZNF735P0CB33 412 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 CCNB1P14635 433 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 PBLDP30039 288 aaPredicted RBP1.12□□□□□ -2.23
VPS35-207ENST00000568191 TNNT2P45379 298 aaPredicted RBP1.12□□□□□ -2.23
VPS35-207ENST00000568191 YWHAGP61981 247 aaKnown RBP eCLIP1.12□□□□□ -2.23
VPS35-207ENST00000568191 KCNJ2P63252 427 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 BST1Q10588 318 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 CDH17Q12864 832 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 GPM6BQ13491 265 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 ORMDL2Q53FV1 153 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 CCNJQ5T5M9 372 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 RGS9BPQ6ZS82 235 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 SLC16A13Q7RTY0 426 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 SNX20Q7Z614 316 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 PDIK1LQ8N165 341 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 TMEM105Q8N8V8 129 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 ZNF502Q8TBZ5 544 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 MRGPRFQ96AM1 343 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 TIMM17AQ99595 171 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 KLF6Q99612 283 aaPredicted RBP1.12□□□□□ -2.23
VPS35-207ENST00000568191 CRACR2AQ9BSW2 395 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 EDA2RQ9HAV5 297 aa1.12□□□□□ -2.23
VPS35-207ENST00000568191 IGHV3OR16-8A0A075B7F1 116 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 ERICH4A6NGS2 130 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 CCDC169A6NNP5 214 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 FAM25EA8MYX2 175 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 CASQ2O14958 399 aaPredicted RBP1.11□□□□□ -2.23
VPS35-207ENST00000568191 H6PDO95479 791 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 SERPIND1P05546 499 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 GZMAP12544 262 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 RAB3BP20337 219 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 TAGLN2P37802 199 aaKnown RBP1.11□□□□□ -2.23
VPS35-207ENST00000568191 SULT1E1P49888 294 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 GDI2P50395 445 aaKnown RBP1.11□□□□□ -2.23
VPS35-207ENST00000568191 GBX2P52951 348 aaPredicted RBP1.11□□□□□ -2.23
VPS35-207ENST00000568191 PLP1P60201 277 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 ACTR1AP61163 376 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 RBX1P62877 108 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 TMED1Q13445 227 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 TGFBIQ15582 683 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 MAJINQ3KP22 176 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 RNASE13Q5GAN3 156 aaKnown RBP1.11□□□□□ -2.23
VPS35-207ENST00000568191 C6orf226Q5I0X4 101 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 CCDC183Q5T5S1 534 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 HCP5Q6MZN7 132 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 GUSBP11Q6P575 273 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 USP50Q70EL3 339 aaPredicted RBP1.11□□□□□ -2.23
VPS35-207ENST00000568191 EGFL6Q8IUX8 553 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 CDKL3Q8IVW4 592 aaPredicted RBP1.11□□□□□ -2.23
VPS35-207ENST00000568191 LIX1Q8N485 282 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 METTL13Q8N6R0 699 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 OR52K2Q8NGK3 314 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 SLC7A13Q8TCU3 470 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 LRRC29Q8WV35 223 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 C17orf50Q8WW18 174 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 NTAN1Q96AB6 310 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 ZNF317Q96PQ6 595 aaPredicted RBP1.11□□□□□ -2.23
VPS35-207ENST00000568191 SHANK2-AS3Q9BTD1 123 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 VPS37BQ9H9H4 285 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 NEK6Q9HC98 313 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 C8orf17Q9NRJ1 99 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 PISDQ9UG56 409 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 TMED5Q9Y3A6 229 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 CBY1Q9Y3M2 126 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 MUC6Q6W4X9 2439 aa1.11□□□□□ -2.23
VPS35-207ENST00000568191 IGHV1OR15-9A0A0B4J2B8 117 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 IGKV1-8A0A0C4DH67 115 aa1.1□□□□□ -2.23
VPS35-207ENST00000568191 A0A1W2PNN7 141 aa1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms