RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 SLC25A16P16260 332 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 NOS3P29474 1203 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 CRABP1P29762 137 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 NR4A2P43354 598 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 OR3A3P47888 321 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 GIPRP48546 466 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 EVX1P49640 407 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 ARHGDIAP52565 204 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 EFNA4P52798 201 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 ZNF45Q02386 682 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 MELKQ14680 651 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 EFNB3Q15768 340 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 NEDD8Q15843 81 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 PGGHGQ32M88 737 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 C10orf128Q5T292 105 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 DPY19L2P2Q6ZN68 376 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 LYSMD2Q8IV50 215 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 ARIH2OSQ8N7S6 290 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 OR4K5Q8NGD3 323 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 OR6F1Q8NGZ6 308 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 SNX33Q8WV41 574 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 NEU4Q8WWR8 484 aaPredicted RBP7.53□□□□□ -1.2
USP3-208ENST00000558285 SLCO4A1Q96BD0 722 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 FBXO17Q96EF6 278 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 RSPO3Q9BXY4 272 aaPredicted RBP7.53□□□□□ -1.2
USP3-208ENST00000558285 BCL2L14Q9BZR8 327 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 MS4A5Q9H3V2 200 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 IL1RAPQ9NPH3 570 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 C20orf141Q9NUB4 165 aa7.53□□□□□ -1.2
USP3-208ENST00000558285 NDRG4Q9ULP0 352 aaKnown RBP7.53□□□□□ -1.2
USP3-208ENST00000558285 A0A087WUU8 490 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 UNC119BA6NIH7 251 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 hCG_2039718K7EN88 272 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 RENP00797 406 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 HLA-HP01893 362 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 OR4A8P0C604 315 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 TSPAN19P0C672 248 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 APEHP13798 732 aaKnown RBP7.52□□□□□ -1.2
USP3-208ENST00000558285 GSTM3P21266 225 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 TUBG1P23258 451 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 CFL1P23528 166 aaKnown RBP7.52□□□□□ -1.2
USP3-208ENST00000558285 GPR4P46093 362 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 PPOXP50336 477 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 GDI2P50395 445 aaKnown RBP7.52□□□□□ -1.2
USP3-208ENST00000558285 FOXG1P55316 489 aaPredicted RBP7.52□□□□□ -1.2
USP3-208ENST00000558285 ADARB1P78563 741 aaKnown RBP7.52□□□□□ -1.2
USP3-208ENST00000558285 IFITM3Q01628 133 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 LGALS3BPQ08380 585 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 SCRN3Q0VDG4 424 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 SNTB2Q13425 540 aaKnown RBP7.52□□□□□ -1.2
USP3-208ENST00000558285 SGCAQ16586 387 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 YIF1BQ5BJH7 314 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 ZMAT1Q5H9K5 638 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 ARMC4Q5T2S8 1044 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 XAF1Q6GPH4 301 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 PODNL1Q6PEZ8 512 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 KCTD20Q7Z5Y7 419 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 SYT9Q86SS6 491 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 ZDHHC21Q8IVQ6 265 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 CBR4Q8N4T8 237 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 SYT14Q8NB59 555 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 SLC30A7Q8NEW0 376 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 WFDC11Q8NEX6 87 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 LHFPL5Q8TAF8 219 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 SETD6Q8TBK2 473 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 C11orf40Q8WZ69 217 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 SEPHS2Q99611 448 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 MRPL13Q9BYD1 178 aaKnown RBP7.52□□□□□ -1.2
USP3-208ENST00000558285 MMP27Q9H306 513 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 NELFAQ9H3P2 528 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 REEP1Q9H902 201 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 SEC61A2Q9H9S3 476 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 TUBG2Q9NRH3 451 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 SLCO1C1Q9NYB5 712 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 CD300AQ9UGN4 299 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 TIMM10BQ9Y5J6 103 aa7.52□□□□□ -1.2
USP3-208ENST00000558285 CRYBG3Q68DQ2 2970 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 TRAV27A0A087WT01 109 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 IGHV2OR16-5A0A0B4J2B6 119 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 A0A1W2PPL8 197 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 GNGT2O14610 69 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 IMPA2O14732 288 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 HEXAP06865 529 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 MSR1P21757 451 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 FPR3P25089 353 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 SDHAP31040 664 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 GLRXP35754 106 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 CDKN1AP38936 164 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 PDLIM4P50479 330 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 ZNF133P52736 654 aaPredicted RBP7.52□□□□□ -1.21
USP3-208ENST00000558285 PIGFQ07326 219 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 BAMBIQ13145 260 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 IKZF1Q13422 519 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 CTF1Q16619 201 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 HIST3H3Q16695 136 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 ESCO2Q56NI9 601 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 FAM27BQ5VT28 67 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 LCN8Q6JVE9 175 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 VHLLQ6RSH7 139 aa7.52□□□□□ -1.21
USP3-208ENST00000558285 SMARCD3Q6STE5 483 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms