RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SAMHD1Q9Y3Z3 626 aaKnown RBP1.5□□□□□ -2.17
SCFD1-216ENST00000555550 ARPC4-TTLL3A0A0A6YYG9 625 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 FAM47DPA6NHR8 397 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 OR6C70A6NIJ9 312 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 PABPC4LP0CB38 370 aaKnown RBP1.49□□□□□ -2.17
SCFD1-216ENST00000555550 ZNF250P15622 560 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 PSMB5P28074 263 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 SSR4P51571 173 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 ZNF235Q14590 738 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 QPRTQ15274 297 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 FAM222AQ5U5X8 452 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 HCP5Q6MZN7 132 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 SASS6Q6UVJ0 657 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 TMEM136Q6ZRR5 245 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 ZFP41Q8N8Y5 198 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 OR1S2Q8NGQ3 325 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 PKNOX2Q96KN3 472 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 RBBP8Q99708 897 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 ETNK2Q9NVF9 386 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 KCNE3Q9Y6H6 103 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 MUC6Q6W4X9 2439 aa1.49□□□□□ -2.17
SCFD1-216ENST00000555550 IGHV7-4-1A0A0J9YVY3 117 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 BICDL2A1A5D9 508 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 EIF1BO60739 113 aaKnown RBP1.48□□□□□ -2.17
SCFD1-216ENST00000555550 SURF6O75683 361 aaKnown RBP1.48□□□□□ -2.17
SCFD1-216ENST00000555550 CD37P11049 281 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 LOXP28300 417 aaPredicted RBP1.48□□□□□ -2.17
SCFD1-216ENST00000555550 EIF1P41567 113 aaKnown RBP1.48□□□□□ -2.17
SCFD1-216ENST00000555550 CEBPDP49716 269 aaPredicted RBP1.48□□□□□ -2.17
SCFD1-216ENST00000555550 RND2P52198 227 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 SEC61GP60059 68 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 SLC25A11Q02978 314 aaKnown RBP1.48□□□□□ -2.17
SCFD1-216ENST00000555550 MEF2CQ06413 473 aaPredicted RBP1.48□□□□□ -2.17
SCFD1-216ENST00000555550 IHHQ14623 411 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 YIF1BQ5BJH7 314 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 ADNP2Q6IQ32 1131 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 ADM2Q7Z4H4 148 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 ZSCAN30Q86W11 494 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 LRRC75A-AS1Q8N1F1 130 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 COX18Q8N8Q8 333 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 STEAP2Q8NFT2 490 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 ZNF502Q8TBZ5 544 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 SLC7A13Q8TCU3 470 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 IKZF2Q9UKS7 526 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 CLEC4AQ9UMR7 237 aa1.48□□□□□ -2.17
SCFD1-216ENST00000555550 IGHV3-49A0A0A0MS15 119 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 GLYATL1P3A0A0U1RQE8 302 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 CDC40O60508 579 aaKnown RBP eCLIP1.47□□□□□ -2.17
SCFD1-216ENST00000555550 MTX2O75431 263 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 DEDDO75618 318 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 KLHL2O95198 593 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 SERPIND1P05546 499 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 PRLHRP49683 370 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 PPP1CBP62140 327 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 TGM3Q08188 693 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 GK3PQ14409 553 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 PGGHGQ32M88 737 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 GUSBP11Q6P575 273 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 ZNF101Q8IZC7 436 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 MS4A15Q8N5U1 240 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 OR2L3Q8NG85 312 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 PLPPR1Q8TBJ4 325 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 TSGA13Q96PP4 275 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 MICU1Q9BPX6 476 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 C1orf50Q9BV19 199 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 GGTLC1Q9BX51 225 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 VCX2Q9H322 139 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 ZSCAN16Q9H4T2 348 aaPredicted RBP1.47□□□□□ -2.17
SCFD1-216ENST00000555550 GORASP2Q9H8Y8 452 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 NEK6Q9HC98 313 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 LSM7Q9UK45 103 aaKnown RBP1.47□□□□□ -2.17
SCFD1-216ENST00000555550 VANGL2Q9ULK5 521 aa1.47□□□□□ -2.17
SCFD1-216ENST00000555550 IGHV1-3A0A0C4DH29 117 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 CLRN2A0PK11 232 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 GABRR3A8MPY1 467 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 CEACAM18A8MTB9 384 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 H0YCG3 227 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 FOXE1O00358 373 aaPredicted RBP1.46□□□□□ -2.18
SCFD1-216ENST00000555550 NUPL2O15504 423 aaKnown RBP1.46□□□□□ -2.18
SCFD1-216ENST00000555550 CNMDO75829 334 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 SEMA3DO95025 777 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 PAHP00439 452 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 IGHV3-11P01762 117 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 EIF4EP06730 217 aaKnown RBP1.46□□□□□ -2.18
SCFD1-216ENST00000555550 CRYGBP07316 175 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 CTSLP07711 333 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 KITLGP21583 273 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 SYKP43405 635 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 PSMD8P48556 350 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 CSNK1EP49674 416 aaKnown RBP1.46□□□□□ -2.18
SCFD1-216ENST00000555550 SYNJ2BPP57105 145 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 CCDC92Q53HC0 331 aaPredicted RBP1.46□□□□□ -2.18
SCFD1-216ENST00000555550 TEX30Q5JUR7 227 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 STUMQ69YW2 141 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 SMARCD3Q6STE5 483 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 C16orf47Q6ZP98 133 aaPredicted RBP1.46□□□□□ -2.18
SCFD1-216ENST00000555550 FAM43BQ6ZT52 329 aaPredicted RBP1.46□□□□□ -2.18
SCFD1-216ENST00000555550 LINC00336Q6ZUF6 198 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 NKAIN4Q8IVV8 208 aa1.46□□□□□ -2.18
SCFD1-216ENST00000555550 SGPP2Q8IWX5 399 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms