RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 IGLV4-69A0A075B6H9 119 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 IGLV3-16A0A075B6K0 115 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 IGHV5-51A0A0C4DH38 117 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 SPAG7O75391 227 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 LSM8O95777 96 aaKnown RBP2.6□□□□□ -1.99
VPS29-205ENST00000548539 BCHEP06276 602 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 HOXC4P09017 264 aaPredicted RBP2.6□□□□□ -1.99
VPS29-205ENST00000548539 CT45A6P0DMU7 189 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 CT45A5P0DMU8 189 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 CT45A7P0DMV0 189 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 RALBP11234 206 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 TUBG1P23258 451 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 U2AF2P26368 475 aaKnown RBP eCLIP2.6□□□□□ -1.99
VPS29-205ENST00000548539 LONP1P36776 959 aaKnown RBP2.6□□□□□ -1.99
VPS29-205ENST00000548539 CCT6AP40227 531 aaKnown RBP2.6□□□□□ -1.99
VPS29-205ENST00000548539 HERVK_113P61574 105 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 LRRC63Q05C16 580 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 PON2Q15165 354 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 SNRNP35Q16560 246 aaKnown RBP2.6□□□□□ -1.99
VPS29-205ENST00000548539 PGGHGQ32M88 737 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 CT45A1Q5HYN5 189 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 PIP5KL1Q5T9C9 394 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 UBE2UQ5VVX9 321 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 TTC19Q6DKK2 380 aaPredicted RBP2.6□□□□□ -1.99
VPS29-205ENST00000548539 OTUD6AQ7L8S5 288 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 PRSS58Q8IYP2 241 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 MICU2Q8IYU8 434 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 CYB561D1Q8N8Q1 229 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 SNX31Q8N9S9 440 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 OR52E2Q8NGJ4 325 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 CT45A3Q8NHU0 189 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 OR51E1Q8TCB6 317 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 CA5BP1Q8WTZ4 195 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 TM4SF18Q96CE8 201 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 DYNLL2Q96FJ2 89 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 ZNF317Q96PQ6 595 aaPredicted RBP2.6□□□□□ -1.99
VPS29-205ENST00000548539 OR2A5Q96R48 311 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 SLC17A9Q9BYT1 436 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 SPNS1Q9H2V7 528 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 VCXQ9H320 206 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 PIGUQ9H490 435 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 TUBG2Q9NRH3 451 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 OR12D3Q9UGF7 316 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 ZNF222Q9UK12 451 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 KLK12Q9UKR0 248 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 RCL1Q9Y2P8 373 aaKnown RBP2.6□□□□□ -1.99
VPS29-205ENST00000548539 GTF3C1Q12789 2109 aa2.6□□□□□ -1.99
VPS29-205ENST00000548539 SCN2AQ99250 2005 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 KCNE1BA0A087WTH5 132 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 A0A1B0GTQ1 180 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 GOLGA6L7A0A1B0GV03 622 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 A0A1W2PP18 115 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 H7C1H1 209 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 HBE1P02100 147 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 RETP07949 1114 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 CD3GP09693 182 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 POLR2MP0CAP2 368 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 CTRB1P17538 263 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 NBL1P41271 181 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 MAGEA1P43355 309 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 VSX2P58304 361 aaPredicted RBP2.59□□□□□ -1.99
VPS29-205ENST00000548539 PPP1CBP62140 327 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 RPS15AP62244 130 aaKnown RBP2.59□□□□□ -1.99
VPS29-205ENST00000548539 TRMT5Q32P41 509 aaKnown RBP2.59□□□□□ -1.99
VPS29-205ENST00000548539 TPTE2P1Q5T6R2 138 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 MBOAT2Q6ZWT7 520 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 CBLN2Q8IUK8 224 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 METTL13Q8N6R0 699 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 OR5W2Q8NH69 310 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 EXOSC8Q96B26 276 aaKnown RBP2.59□□□□□ -1.99
VPS29-205ENST00000548539 ANKRD60Q9BZ19 345 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 NTN4Q9HB63 628 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 MRM3Q9HC36 420 aaKnown RBP2.59□□□□□ -1.99
VPS29-205ENST00000548539 LHX9Q9NQ69 397 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 FAM49BQ9NUQ9 324 aa2.59□□□□□ -1.99
VPS29-205ENST00000548539 ASTN1O14525 1302 aa2.59□□□□□ -2
VPS29-205ENST00000548539 GAKO14976 1311 aa2.59□□□□□ -2
VPS29-205ENST00000548539 A0A1B0GVX0 72 aa2.58□□□□□ -2
VPS29-205ENST00000548539 H7C417 338 aa2.58□□□□□ -2
VPS29-205ENST00000548539 GABRPO00591 440 aa2.58□□□□□ -2
VPS29-205ENST00000548539 BCKDKO14874 412 aa2.58□□□□□ -2
VPS29-205ENST00000548539 CASC3O15234 703 aaKnown RBP2.58□□□□□ -2
VPS29-205ENST00000548539 SIVA1O15304 175 aa2.58□□□□□ -2
VPS29-205ENST00000548539 NVLO15381 856 aaKnown RBP2.58□□□□□ -2
VPS29-205ENST00000548539 SNAI2O43623 268 aa2.58□□□□□ -2
VPS29-205ENST00000548539 SLC25A14O95258 325 aaPredicted RBP2.58□□□□□ -2
VPS29-205ENST00000548539 HLA-HP01893 362 aa2.58□□□□□ -2
VPS29-205ENST00000548539 KRT16P08779 473 aa2.58□□□□□ -2
VPS29-205ENST00000548539 PGAM1P18669 254 aa2.58□□□□□ -2
VPS29-205ENST00000548539 MAGP20916 626 aa2.58□□□□□ -2
VPS29-205ENST00000548539 WARSP23381 471 aaKnown RBP2.58□□□□□ -2
VPS29-205ENST00000548539 RFC3P40938 356 aa2.58□□□□□ -2
VPS29-205ENST00000548539 UBE2NP61088 152 aaKnown RBP2.58□□□□□ -2
VPS29-205ENST00000548539 SEMG2Q02383 582 aa2.58□□□□□ -2
VPS29-205ENST00000548539 CDH17Q12864 832 aa2.58□□□□□ -2
VPS29-205ENST00000548539 SLAQ13239 276 aa2.58□□□□□ -2
VPS29-205ENST00000548539 GABRA6Q16445 453 aa2.58□□□□□ -2
VPS29-205ENST00000548539 HIKESHIQ53FT3 197 aa2.58□□□□□ -2
VPS29-205ENST00000548539 PLCXD3Q63HM9 321 aa2.58□□□□□ -2
VPS29-205ENST00000548539 ANGPTL8Q6UXH0 198 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms