RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 POU4F2Q12837 409 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 PCK2Q16822 640 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 RSPO1Q2MKA7 263 aaPredicted RBP11.28□□□□□ -0.6
CCDC42-202ENST00000539522 HIST2H3PS2Q5TEC6 136 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 HIST2H3AQ71DI3 136 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 PAQR4Q8N4S7 273 aaPredicted RBP11.28□□□□□ -0.6
CCDC42-202ENST00000539522 OR52I1Q8NGK6 324 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 OR10S1Q8NGN2 331 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 OR2T4Q8NH00 348 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 SMAP2Q8WU79 429 aaPredicted RBP11.28□□□□□ -0.6
CCDC42-202ENST00000539522 NEUROG1Q92886 237 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 MARVELD3Q96A59 401 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 LGALS12Q96DT0 336 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 PLPPR2Q96GM1 343 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 USB1Q9BQ65 265 aaKnown RBP11.28□□□□□ -0.6
CCDC42-202ENST00000539522 RHNO1Q9BSD3 238 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 OBP2BQ9NPH6 170 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 PNRC2Q9NPJ4 139 aaKnown RBP11.28□□□□□ -0.6
CCDC42-202ENST00000539522 CHCHD3Q9NX63 227 aaKnown RBP11.28□□□□□ -0.6
CCDC42-202ENST00000539522 DIMT1Q9UNQ2 313 aaKnown RBP11.28□□□□□ -0.6
CCDC42-202ENST00000539522 COMMD3-BMI1R4GMX3 469 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 VPS13CQ709C8 3753 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 AKAP9Q99996 3911 aa11.27□□□□□ -0.6
CCDC42-202ENST00000539522 SHISA9B4DS77 424 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 RAB36O95755 333 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 CD79AP11912 226 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 PCMT1P22061 227 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 CD40P25942 277 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 PEX19P40855 299 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 BLVRAP53004 296 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 RPS7P62081 194 aaKnown RBP11.27□□□□□ -0.61
CCDC42-202ENST00000539522 RAB1AP62820 205 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 IRF3Q14653 427 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 RAB39AQ14964 217 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 CCDC92Q53HC0 331 aaPredicted RBP11.27□□□□□ -0.61
CCDC42-202ENST00000539522 LCN1P1Q5VSP4 162 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 SLC18B1Q6NT16 456 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 CORO6Q6QEF8 472 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 CFAP77Q6ZQR2 320 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 SLC16A14Q7RTX9 510 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 TIGD4Q8IY51 512 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 FAM169BQ8N8A8 192 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 AKR7LQ8NHP1 331 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 FCGR1BQ92637 280 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 RORBQ92753 470 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 ZMYND19Q96E35 227 aaPredicted RBP11.27□□□□□ -0.61
CCDC42-202ENST00000539522 C14orf79Q96F83 325 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 PIK3IP1Q96FE7 263 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 MAP6Q96JE9 813 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 AMELYQ99218 206 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 ACOT13Q9NPJ3 140 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 CYB5R1Q9UHQ9 305 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 ERGIC3Q9Y282 383 aa11.27□□□□□ -0.61
CCDC42-202ENST00000539522 EXOSC1Q9Y3B2 195 aaKnown RBP11.27□□□□□ -0.61
CCDC42-202ENST00000539522 RTTNQ86VV8 2226 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 LOC100509620A0A075B734 347 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 PRR32B1ATL7 298 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 M0R1B8 84 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 RER1O15258 196 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 SELENOFO60613 162 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 GLCEO94923 617 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 CCL2P13500 99 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 ZNF35P13682 527 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 MYL12AP19105 171 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 GSTT1P30711 240 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 IDH3GP51553 393 aaPredicted RBP11.26□□□□□ -0.61
CCDC42-202ENST00000539522 UBE2NP61088 152 aaKnown RBP11.26□□□□□ -0.61
CCDC42-202ENST00000539522 LSM6P62312 80 aaKnown RBP11.26□□□□□ -0.61
CCDC42-202ENST00000539522 HGFACQ04756 655 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 NEDD8Q15843 81 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 MSMPQ1L6U9 139 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 GSG1Q2KHT4 349 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 C3orf36Q3SXR2 165 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 PABPC1L2AQ5JQF8 200 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 XAF1Q6GPH4 301 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 ZNF774Q6NX45 483 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.26□□□□□ -0.61
CCDC42-202ENST00000539522 LINC00346Q8IVM7 164 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 PROKR2Q8NFJ6 384 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 KBTBD8Q8NFY9 601 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 MUCL1Q96DR8 90 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 JAM3Q9BX67 310 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 OR2H1Q9GZK4 316 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 FAM192AQ9GZU8 254 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 ASH2LQ9UBL3 628 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 KLHDC2Q9Y2U9 406 aa11.26□□□□□ -0.61
CCDC42-202ENST00000539522 ABCA12Q86UK0 2595 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 SMIM31A0A1B0GVY4 71 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 J3QRE1 110 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 SYNGR3O43761 229 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 UBL3O95164 117 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 ADRA2AP08913 450 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 MAP2K4P45985 399 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 CAPZA2P47755 286 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 HCCSP53701 268 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 NAAAQ02083 359 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 TLE4Q04727 773 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 GLO1Q04760 184 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 GGTLC2Q14390 218 aa11.25□□□□□ -0.61
CCDC42-202ENST00000539522 TBCEQ15813 527 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms