RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PAMR1Q6UXH9 720 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 YIPF7Q8N8F6 280 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 POC5Q8NA72 575 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 RPS4Y2Q8TD47 263 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 RNF166Q96A37 237 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 SFXN2Q96NB2 322 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 TRIB1Q96RU8 372 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 SRRQ9GZT4 340 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 TMEM185BQ9H7F4 350 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 NPDC1Q9NQX5 325 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-208ENST00000537004 TMEM14AQ9Y6G1 99 aa10.57□□□□□ -0.72
CLIP1-208ENST00000537004 MYO9AB2RTY4 2548 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 OTOGQ6ZRI0 2925 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 FABP12A6NFH5 140 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 A6NIZ1 184 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 AHRRA9YTQ3 701 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 GPRIN2O60269 458 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 HPGDSO60760 199 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 RPP14O95059 124 aaKnown RBP10.56□□□□□ -0.72
CLIP1-208ENST00000537004 ABHD16AO95870 558 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 KRT8P05787 483 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 PSKH1P11801 424 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 IFNGR1P15260 489 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 EIF1P41567 113 aaKnown RBP10.56□□□□□ -0.72
CLIP1-208ENST00000537004 LHX2P50458 406 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 DAP3P51398 398 aaKnown RBP10.56□□□□□ -0.72
CLIP1-208ENST00000537004 BLVRAP53004 296 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 B3GALT5-AS1P59052 145 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 RAP1BP61224 184 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 RAP1AP62834 184 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 SNTB1Q13884 538 aaKnown RBP10.56□□□□□ -0.72
CLIP1-208ENST00000537004 IDNKQ5T6J7 187 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 OR8H2Q8N162 312 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 ASB10Q8WXI3 467 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 FOXN4Q96NZ1 517 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 OR14A2Q96R54 314 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 IKZF2Q9UKS7 526 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 B3GALT5Q9Y2C3 310 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 SPG11Q96JI7 2443 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 PDZD2O15018 2839 aa10.56□□□□□ -0.72
CLIP1-208ENST00000537004 A0A1W2PPK0 400 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 NPIPB13A6NJU9 1138 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 NPIPB4C9JG80 1138 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ZNF593O00488 134 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-208ENST00000537004 PHYHO14832 338 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 FZD7O75084 574 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 UPK3AO75631 287 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 GATBO75879 557 aaKnown RBP10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ZFPL1O95159 310 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 OPN1LWP04000 364 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 BMP5P22003 454 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 CRABP1P29762 137 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 DSCR4P56555 118 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-208ENST00000537004 OR10A3P58181 314 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 EGR3Q06889 387 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ETFDHQ16134 617 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 NDUFA5Q16718 116 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 LIPNQ5VXI9 398 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 RAET1LQ5VY80 246 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 SLC35D2Q76EJ3 337 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 MCEMP1Q8IX19 187 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 UBQLNLQ8IYU4 475 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 OTOSQ8NHW6 89 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 HAVCR2Q8TDQ0 301 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 THEM6Q8WUY1 208 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ASB5Q8WWX0 329 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ACOT12Q8WYK0 555 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 HSD17B8Q92506 261 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ZBTB8AQ96BR9 441 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 SP140LQ9H930 580 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 FANCFQ9NPI8 374 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 MRPL22Q9NWU5 206 aaKnown RBP10.55□□□□□ -0.72
CLIP1-208ENST00000537004 KCNG2Q9UJ96 466 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ING1Q9UK53 422 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-208ENST00000537004 CCDC168Q8NDH2 2452 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 TRAV1-2A0A0B4J238 106 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 A0A1W2PNV4 684 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 TMCC2O75069 709 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ARL6IP5O75915 188 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 PTTG1O95997 202 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ACTL6AO96019 429 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 UCHL1P09936 223 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 ADH6P28332 368 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 CLDN15P56746 228 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 DEFA1P59665 94 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 DEFA3P59666 94 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 GLO1Q04760 184 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 MRPL28Q13084 256 aaKnown RBP10.55□□□□□ -0.72
CLIP1-208ENST00000537004 SELENBP1Q13228 472 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 OTPQ5XKR4 325 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 FAM205BPQ63HN1 556 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 SFXN4Q6P4A7 337 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 CNIH2Q6PI25 160 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 WDFY1Q8IWB7 410 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 C9orf106Q8NAJ2 232 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 SLC25A43Q8WUT9 341 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-208ENST00000537004 OR5B2Q96R09 309 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 AMELYQ99218 206 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 KCNJ16Q9NPI9 418 aa10.55□□□□□ -0.72
CLIP1-208ENST00000537004 TIGARQ9NQ88 270 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms