RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-206ENST00000536429 LOXL1Q08397 574 aaPredicted RBP11.25□□□□□ -0.61
PRKDC-206ENST00000536429 CRMP1Q14194 572 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 GGTLC2Q14390 218 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 NKPD1Q17RQ9 610 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 TMEM249Q2WGJ8 235 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 SLC36A3Q495N2 470 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 HIST2H3PS2Q5TEC6 136 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 RPL13AP3Q6NVV1 102 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 DNM1P34Q6PK57 102 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 HIST2H3AQ71DI3 136 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 LNX2Q8N448 690 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 PAPD5Q8NDF8 572 aaKnown RBP11.25□□□□□ -0.61
PRKDC-206ENST00000536429 OR51L1Q8NGJ5 315 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 OR9Q1Q8NGQ5 310 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 KLF14Q8TD94 323 aaPredicted RBP11.25□□□□□ -0.61
PRKDC-206ENST00000536429 UBASH3BQ8TF42 649 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 POM121Q96HA1 1249 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 WACQ9BTA9 647 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 NTN4Q9HB63 628 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 PDP1Q9P0J1 537 aaPredicted RBP11.25□□□□□ -0.61
PRKDC-206ENST00000536429 EIF3KQ9UBQ5 218 aaKnown RBP11.25□□□□□ -0.61
PRKDC-206ENST00000536429 FBXO9Q9UK97 447 aaPredicted RBP11.25□□□□□ -0.61
PRKDC-206ENST00000536429 NDRG4Q9ULP0 352 aaKnown RBP11.25□□□□□ -0.61
PRKDC-206ENST00000536429 POLR1DQ9Y2S0 133 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 JMJD1CQ15652 2540 aa11.25□□□□□ -0.61
PRKDC-206ENST00000536429 CUBNO60494 3623 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 ABCA2Q9BZC7 2435 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 LOC390937A0A1W2PQ73 354 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 TVP23AA6NH52 213 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 GNGT2O14610 69 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 TIPRLO75663 272 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 ABHD16AO95870 558 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 GYPBP06028 91 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 CLUP10909 449 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 GSTM3P21266 225 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 USF1P22415 310 aaPredicted RBP11.24□□□□□ -0.61
PRKDC-206ENST00000536429 COL8A2P25067 703 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 GGT2P36268 569 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 RPS27P42677 84 aaKnown RBP11.24□□□□□ -0.61
PRKDC-206ENST00000536429 HNRNPA0Q13151 305 aaKnown RBP11.24□□□□□ -0.61
PRKDC-206ENST00000536429 RSPO1Q2MKA7 263 aaPredicted RBP11.24□□□□□ -0.61
PRKDC-206ENST00000536429 SLC18B1Q6NT16 456 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 CD300LDQ6UXZ3 194 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 CFAP77Q6ZQR2 320 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 OR2T33Q8NG76 320 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 OR1F12Q8NHA8 337 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 YIPF5Q969M3 257 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 PIMREGQ9BSJ6 248 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 RBM4Q9BWF3 364 aaKnown RBP11.24□□□□□ -0.61
PRKDC-206ENST00000536429 MS4A5Q9H3V2 200 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 HINT3Q9NQE9 182 aaKnown RBP11.24□□□□□ -0.61
PRKDC-206ENST00000536429 STARD10Q9Y365 291 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 GRIP1Q9Y3R0 1128 aa11.24□□□□□ -0.61
PRKDC-206ENST00000536429 ARRDC5A6NEK1 342 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 C17orf100A8MU93 164 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 NDUFS8O00217 210 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 E2F6O75461 281 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 IGHV3-13P01766 116 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 HLA-DQA2P01906 255 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 ERCC1P07992 297 aaPredicted RBP11.23□□□□□ -0.61
PRKDC-206ENST00000536429 MMP15P51511 669 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 SELENOVP59797 346 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 COX10Q12887 443 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 RIN1Q13671 783 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 CCNIQ14094 377 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 GK3PQ14409 553 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 TRIP10Q15642 601 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 ZNF718Q3SXZ3 478 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 MBNL2Q5VZF2 373 aaKnown RBP11.23□□□□□ -0.61
PRKDC-206ENST00000536429 TMEM154Q6P9G4 183 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 ZNF786Q8N393 782 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 PROKR2Q8NFJ6 384 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 UTP4Q969X6 686 aaKnown RBP11.23□□□□□ -0.61
PRKDC-206ENST00000536429 HCAR1Q9BXC0 346 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 NMNAT2Q9BZQ4 307 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 MED20Q9H944 212 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 MYOZ1Q9NP98 299 aaPredicted RBP11.23□□□□□ -0.61
PRKDC-206ENST00000536429 PNRC2Q9NPJ4 139 aaKnown RBP11.23□□□□□ -0.61
PRKDC-206ENST00000536429 SLCO1C1Q9NYB5 712 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 DNAJB9Q9UBS3 223 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 CYB5R1Q9UHQ9 305 aa11.23□□□□□ -0.61
PRKDC-206ENST00000536429 LRP5LA4QPB2 252 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 ZSCAN5BA6NJL1 495 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 H3BN98 237 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 CD5LO43866 347 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 ATP5HO75947 161 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 IGHV4-31P0DP07 118 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 ANOS1P23352 680 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 GIFP27352 417 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 POU1F1P28069 291 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 GCH1P30793 250 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 RBMXP38159 391 aaKnown RBP11.22□□□□□ -0.61
PRKDC-206ENST00000536429 CCL8P80075 99 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 PSG7Q13046 419 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 KRTAP27-1Q3LI81 207 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 SPRNQ5BIV9 151 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 ACSM5Q6NUN0 579 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 ZNF511Q8NB15 262 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 GJC3Q8NFK1 279 aa11.22□□□□□ -0.61
PRKDC-206ENST00000536429 OR10S1Q8NGN2 331 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms