RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ZNFX1Q9P2E3 1918 aaKnown RBP1.68□□□□□ -2.14
CD44-238ENST00000534296 TRAV6A0A075B6T7 132 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 IGHV5-10-1A0A0J9YXX1 117 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 TMEM223A0PJW6 202 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 TMEM150BA6NC51 233 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 GOLGA8JA6NMD2 632 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 H0YHG0 523 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 M0R3G1 203 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 RBFOX2O43251 390 aaKnown RBP eCLIP1.68□□□□□ -2.14
CD44-238ENST00000534296 CHST10O43529 356 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 EIF4E2O60573 245 aaKnown RBP1.68□□□□□ -2.14
CD44-238ENST00000534296 ZNF324O75467 553 aaPredicted RBP1.68□□□□□ -2.14
CD44-238ENST00000534296 CTAG2O75638 210 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 IGLV2-23P01705 113 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 IL4P05112 153 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 ADRA2AP08913 450 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 RHOXF2BP0C7M4 288 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 CISD3P0C7P0 127 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 ZNF688P0C7X2 276 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 GOLGA8HP0CJ92 632 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 CT45A6P0DMU7 189 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 CT45A5P0DMU8 189 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 CT45A7P0DMV0 189 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 IGHV1-8P0DP01 117 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 SFTPCP11686 197 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 GALP22466 123 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 MYL9P24844 172 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 U2AF2P26368 475 aaKnown RBP eCLIP1.68□□□□□ -2.14
CD44-238ENST00000534296 AQP2P41181 271 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 CACNG7P62955 275 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 GBE1Q04446 702 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 LIPEQ05469 1076 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 STK11Q15831 433 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 MRPL23Q16540 153 aaKnown RBP1.68□□□□□ -2.14
CD44-238ENST00000534296 PGGHGQ32M88 737 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 BEX5Q5H9J7 111 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 CT45A1Q5HYN5 189 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 LY6G6FQ5SQ64 297 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 VAX1Q5SQQ9 334 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 GPR107Q5VW38 600 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 THOC7Q6I9Y2 204 aaKnown RBP1.68□□□□□ -2.14
CD44-238ENST00000534296 PRMT9Q6P2P2 845 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 PLET1Q6UQ28 207 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 Q6ZSR3 168 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 ZNF547Q8IVP9 402 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 RIMKLAQ8IXN7 391 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 FAM71AQ8IYT1 594 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 COMMD1Q8N668 190 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 CSGALNACT2Q8N6G5 542 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 PRELID2Q8N945 189 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 UBAC2Q8NBM4 344 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 OR10J6PQ8NGY7 276 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 CT45A3Q8NHU0 189 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 TSEN15Q8WW01 171 aaKnown RBP1.68□□□□□ -2.14
CD44-238ENST00000534296 LRRC58Q96CX6 371 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 GALNT14Q96FL9 552 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 TBL1YQ9BQ87 522 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 ZYG11BQ9C0D3 744 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 ACTR3CQ9C0K3 210 aaPredicted RBP1.68□□□□□ -2.14
CD44-238ENST00000534296 OR51M1Q9H341 326 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 MYOZ1Q9NP98 299 aaPredicted RBP1.68□□□□□ -2.14
CD44-238ENST00000534296 TMEM9BQ9NQ34 198 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 PTTG3PQ9NZH4 202 aa1.68□□□□□ -2.14
CD44-238ENST00000534296 CAB39Q9Y376 341 aaPredicted RBP1.68□□□□□ -2.14
CD44-238ENST00000534296 MTCL1Q9Y4B5 1905 aaKnown RBP1.68□□□□□ -2.14
CD44-238ENST00000534296 MN1Q10571 1320 aaPredicted RBP1.67□□□□□ -2.14
CD44-238ENST00000534296 PKD1L2Q7Z442 2459 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 KMT2BQ9UMN6 2715 aaPredicted RBP1.67□□□□□ -2.14
CD44-238ENST00000534296 TRBV9A0A0B4J1U6 114 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 TRAV40A0A0B4J280 105 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 A0A1B0GW55 424 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 SERPINE3A8MV23 424 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 L7N2F9 121 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 DNALI1O14645 258 aaPredicted RBP1.67□□□□□ -2.14
CD44-238ENST00000534296 EIF3HO15372 352 aaKnown RBP eCLIP1.67□□□□□ -2.14
CD44-238ENST00000534296 DNAJB6O75190 326 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 HSBP1O75506 76 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 CLDN11O75508 207 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 SLC22A5O76082 557 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 SEMA3DO95025 777 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 EIF4EP06730 217 aaKnown RBP1.67□□□□□ -2.14
CD44-238ENST00000534296 CD3GP09693 182 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 DUX4L2P0CJ85 424 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 DUX4L3P0CJ86 424 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 DUX4L5P0CJ88 424 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 DUX4L6P0CJ89 424 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 DUX4L7P0CJ90 424 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 C1GALT1C1LP0DN25 315 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 ANXA8P13928 327 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 ZNF823P16415 610 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 IL1RNP18510 177 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 STOMP27105 288 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 PITPNAQ00169 270 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 SLC25A11Q02978 314 aaKnown RBP1.67□□□□□ -2.14
CD44-238ENST00000534296 ZNF266Q14584 549 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 RSPO1Q2MKA7 263 aaPredicted RBP1.67□□□□□ -2.14
CD44-238ENST00000534296 CHRFAM7AQ494W8 412 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 COX19Q49B96 90 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 ANXA8L1Q5VT79 327 aa1.67□□□□□ -2.14
CD44-238ENST00000534296 DUX4L9Q6RFH8 374 aaPredicted RBP1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms