RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 DNAJC27Q9NZQ0 273 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 JKAMPQ9P055 326 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 Q9UFV3 132 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 PROCRQ9UNN8 238 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 TMEM14AQ9Y6G1 99 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 X6R8D5 127 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 TEX15Q9BXT5 2789 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 IGKV1D-43A0A0B4J1Z2 117 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 MAGEA13PA6NCF6 341 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 C12orf71A8MTZ7 269 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 FAM171A2A8MVW0 826 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 NUDT19A8MXV4 375 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 H7C1C5 153 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 DVL2O14641 736 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 XPNPEP2O43895 674 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 FAM20BO75063 409 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 CLDN1O95832 211 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 HLA-DQA2P01906 255 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 TFP02787 698 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 CDK1P06493 297 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 CST2P09228 141 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 ALOX5APP20292 161 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 PYCR1P32322 319 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 GABARAPL2P60520 117 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 PCBD1P61457 104 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 RPS7P62081 194 aaKnown RBP6.48□□□□□ -1.37
CD44-228ENST00000528455 LCN6P62502 163 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 ARF1P84077 181 aaKnown RBP6.48□□□□□ -1.37
CD44-228ENST00000528455 ZNF91Q05481 1191 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 FMODQ06828 376 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 SGCAQ16586 387 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 CEACAM16Q2WEN9 425 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 KCTD21Q4G0X4 260 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 ANKRD16Q6P6B7 361 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 VWA1Q6PCB0 445 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 DEGS2Q6QHC5 323 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 LINGO2Q7L985 606 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 PRSS48Q7RTY5 328 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 DPPA2Q7Z7J5 298 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 MRGPRGQ86SM5 289 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 FJX1Q86VR8 437 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 P2RY8Q86VZ1 359 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 GABRG1Q8N1C3 465 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 SLC22A24Q8N4F4 322 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 RPRMLQ8N4K4 120 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 ACBD7Q8N6N7 88 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 ZNF433Q8N7K0 673 aaPredicted RBP6.48□□□□□ -1.37
CD44-228ENST00000528455 NAXEQ8NCW5 288 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 OR51L1Q8NGJ5 315 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 OR52I1Q8NGK6 324 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 ASB5Q8WWX0 329 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 NSMAFQ92636 917 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 BCL2L2Q92843 193 aaPredicted RBP6.48□□□□□ -1.37
CD44-228ENST00000528455 LGALS12Q96DT0 336 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 INTS14Q96SY0 518 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 FOXB1Q99853 325 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 COPS4Q9BT78 406 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 KCNN2Q9H2S1 579 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 RERGLQ9H628 205 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 ZNF696Q9H7X3 374 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 WDR76Q9H967 626 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 ADGRL4Q9HBW9 690 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 TMEM38BQ9NVV0 291 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 MRPL22Q9NWU5 206 aaKnown RBP6.48□□□□□ -1.37
CD44-228ENST00000528455 CHCHD3Q9NX63 227 aaKnown RBP6.48□□□□□ -1.37
CD44-228ENST00000528455 TAS2R16Q9NYV7 291 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 COQ3Q9NZJ6 369 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 CYB5R1Q9UHQ9 305 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 PRSS50Q9UI38 385 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 DIMT1Q9UNQ2 313 aaKnown RBP6.48□□□□□ -1.37
CD44-228ENST00000528455 UGT2A1Q9Y4X1 527 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 UNC79Q9P2D8 2635 aa6.48□□□□□ -1.37
CD44-228ENST00000528455 ITPR2Q14571 2701 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 NOTCH2Q04721 2471 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 A0A087WXM4 84 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 PHYHO14832 338 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 RGS10O43665 173 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 ZG16O60844 167 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 MPZL1O95297 269 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 FARS2O95363 451 aaKnown RBP6.47□□□□□ -1.37
CD44-228ENST00000528455 RAB36O95755 333 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 IGHV3-9P01782 118 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 LYNP07948 512 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 TACSTD2P09758 323 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 GAAP10253 952 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 AGAP20933 346 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 MSR1P21757 451 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 EEF1B2P24534 225 aaKnown RBP6.47□□□□□ -1.37
CD44-228ENST00000528455 EDNRAP25101 427 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 CHRNB4P30926 498 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 CAPZA2P47755 286 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 ENTPD1P49961 510 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 NUDT6P53370 316 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 ACTC1P68032 377 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 ACTA1P68133 377 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 HIST1H3AP68431 136 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 SIRPAP78324 504 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 GALEQ14376 348 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 GABRA6Q16445 453 aa6.47□□□□□ -1.37
CD44-228ENST00000528455 HIST2H3PS2Q5TEC6 136 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms