RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CYSLTR2Q9NS75 346 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 TRAPPC4Q9Y296 219 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 SMCO3A2RU48 225 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 FAM221AA4D161 298 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 PRSS37A4D1T9 235 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 SULT1C2O00338 296 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 EIF4E2O60573 245 aaKnown RBP10.61□□□□□ -0.71
SYNPO-204ENST00000519664 ZNF254O75437 659 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 SNRNP200O75643 2136 aaKnown RBP10.61□□□□□ -0.71
SYNPO-204ENST00000519664 NKX2-2O95096 273 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 IFNA17P01571 189 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 S100A8P05109 93 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 QDPRP09417 244 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 CLDN20P56880 219 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 FMODQ06828 376 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 MRPL49Q13405 166 aaKnown RBP10.61□□□□□ -0.71
SYNPO-204ENST00000519664 PRICKLE4Q2TBC4 344 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 ADGRE4PQ86SQ3 457 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 RPS19BP1Q86WX3 136 aaKnown RBP10.61□□□□□ -0.71
SYNPO-204ENST00000519664 RELL2Q8NC24 303 aaPredicted RBP10.61□□□□□ -0.71
SYNPO-204ENST00000519664 KCNG3Q8TAE7 436 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 PHYHIPQ92561 330 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 CCDC86Q9H6F5 360 aaKnown RBP10.61□□□□□ -0.71
SYNPO-204ENST00000519664 CALHM2Q9HA72 323 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 SLC23A1Q9UHI7 598 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 LEUTXA8MZ59 168 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 K7EQS6 105 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 SERPINE2P07093 398 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 MAP2K6P52564 334 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 ZNF628Q5EBL2 1059 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 ABI3BPQ7Z7G0 1075 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 CNEP1R1Q8N9A8 125 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 OR4D9Q8NGE8 314 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 NT5CQ8TCD5 201 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 PTP4A1Q93096 173 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 SLAMF6Q96DU3 332 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 ABHD6Q9BV23 337 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 ZNF831Q5JPB2 1677 aa10.61□□□□□ -0.71
SYNPO-204ENST00000519664 CXorf51AA0A1B0GTR3 108 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 PRAMEF27A3QJZ7 478 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 MT-ATP6P00846 226 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 TPOP07202 933 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 TPT1P13693 172 aaKnown RBP10.6□□□□□ -0.71
SYNPO-204ENST00000519664 CDKN2AP42771 156 aaKnown RBP10.6□□□□□ -0.71
SYNPO-204ENST00000519664 FZD2Q14332 565 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 EBPQ15125 230 aaKnown RBP10.6□□□□□ -0.71
SYNPO-204ENST00000519664 OR10R2Q8NGX6 335 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 SCARB1Q8WTV0 552 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 PARP14Q460N5 1801 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 TBX19O60806 448 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 CBX7O95931 251 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 IFNA5P01569 189 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 CDAP32320 146 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 ECH1Q13011 328 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 ARL6IP1Q15041 203 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 LINC00303Q3SY05 128 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 FAM199XQ6PEV8 388 aaPredicted RBP10.6□□□□□ -0.71
SYNPO-204ENST00000519664 TMEM52Q8NDY8 209 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 SLC22A11Q9NSA0 550 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 KCND3Q9UK17 655 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 ETV7Q9Y603 341 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 A6NCN8 305 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 ZP3P21754 424 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 CX3CR1P49238 355 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 SSR4P51571 173 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 LAIR2Q6ISS4 152 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 FIP1L1Q6UN15 594 aaKnown RBP10.6□□□□□ -0.71
SYNPO-204ENST00000519664 NPSR1Q6W5P4 371 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 SUMF1Q8NBK3 374 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 OR4S1Q8NGB4 309 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 OR56B1Q8NGI3 324 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 SNIP1Q8TAD8 396 aaKnown RBP10.6□□□□□ -0.71
SYNPO-204ENST00000519664 TAAR8Q969N4 342 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 MED18Q9BUE0 208 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 PHF7Q9BWX1 381 aaPredicted RBP10.6□□□□□ -0.71
SYNPO-204ENST00000519664 NKX6-2Q9C056 277 aaPredicted RBP10.6□□□□□ -0.71
SYNPO-204ENST00000519664 GFOD1Q9NXC2 390 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 DNAJB12Q9NXW2 375 aaKnown RBP10.6□□□□□ -0.71
SYNPO-204ENST00000519664 ARID2Q68CP9 1835 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 PTBP1P26599 531 aaKnown RBP eCLIP10.6□□□□□ -0.71
SYNPO-204ENST00000519664 TAS2R31P59538 309 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 PHLDA2Q53GA4 152 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 FBXW12Q6X9E4 464 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 ZNF709Q8N972 641 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 SECTM1Q8WVN6 248 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 FKRPQ9H9S5 495 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 MMP25Q9NPA2 562 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 KIF25Q9UIL4 384 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 B9D1Q9UPM9 204 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 ACACAQ13085 2346 aa10.6□□□□□ -0.71
SYNPO-204ENST00000519664 NXPH3O95157 252 aa10.59□□□□□ -0.71
SYNPO-204ENST00000519664 UBBP0CG47 229 aa10.59□□□□□ -0.71
SYNPO-204ENST00000519664 UBCP0CG48 685 aaKnown RBP10.59□□□□□ -0.71
SYNPO-204ENST00000519664 NME2P22392 152 aa10.59□□□□□ -0.71
SYNPO-204ENST00000519664 OPRM1P35372 400 aa10.59□□□□□ -0.71
SYNPO-204ENST00000519664 RAB5CP51148 216 aa10.59□□□□□ -0.71
SYNPO-204ENST00000519664 C21orf58P58505 322 aa10.59□□□□□ -0.71
SYNPO-204ENST00000519664 RBM39Q14498 530 aaKnown RBP10.59□□□□□ -0.71
SYNPO-204ENST00000519664 ZIC1Q15915 447 aa10.59□□□□□ -0.71
SYNPO-204ENST00000519664 ZNF74Q16587 644 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms