RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CST11Q9H112 138 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 POLE3Q9NRF9 147 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 MED19A0JLT2 244 aaPredicted RBP8.71□□□□□ -1.02
VCAN-210ENST00000513960 PRR32B1ATL7 298 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 STMND1H3BQB6 276 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 ZNF749O43361 778 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 GLCEO94923 617 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 RENP00797 406 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 PMP2P02689 132 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 ERCC1P07992 297 aaPredicted RBP8.71□□□□□ -1.02
VCAN-210ENST00000513960 HOXB5P09067 269 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 SLC35E2P0CK97 266 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 F2RL1P55085 397 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 RAB38P57729 211 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 SRSF5Q13243 272 aaKnown RBP8.71□□□□□ -1.02
VCAN-210ENST00000513960 ZNF528Q3MIS6 628 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 LY6G6FQ5SQ64 297 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 PAPD4Q6PIY7 484 aaKnown RBP8.71□□□□□ -1.02
VCAN-210ENST00000513960 TMEM92Q6UXU6 159 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 GVQW1Q8N7I0 195 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 CCDC74AQ96AQ1 378 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 SLC25A44Q96H78 314 aaPredicted RBP8.71□□□□□ -1.02
VCAN-210ENST00000513960 WDR76Q9H967 626 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 FN3KRPQ9HA64 309 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 ZNF275Q9NSD4 429 aaPredicted RBP8.71□□□□□ -1.02
VCAN-210ENST00000513960 ATXN7L1Q9ULK2 861 aaPredicted RBP8.71□□□□□ -1.02
VCAN-210ENST00000513960 MRPS33Q9Y291 106 aaKnown RBP8.71□□□□□ -1.02
VCAN-210ENST00000513960 TMED7Q9Y3B3 224 aa8.71□□□□□ -1.02
VCAN-210ENST00000513960 LOC100289279A0A1B0GTE1 492 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 STK17BO94768 372 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 HTR3BO95264 441 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 ITGA5P08648 1049 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 ABCD3P28288 659 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 ID4P47928 161 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 PNLIPRP2P54317 469 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 DEFA6Q01524 100 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 C1orf61Q13536 156 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 NR0B2Q15466 257 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 MPPED2Q15777 294 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 CSRP2Q16527 193 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 MEP1BQ16820 701 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 ANKRD16Q6P6B7 361 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 FAM180AQ6UWF9 173 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 C5orf46Q6UWT4 87 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 ZNF101Q8IZC7 436 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 OR2G2Q8NGZ5 317 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 ST7LQ8TDW4 575 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 MAFIPQ8WZ33 124 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 ROBO4Q8WZ75 1007 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 PHYHIPQ92561 330 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 CMTM3Q96MX0 182 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 SLC25A21Q9BQT8 299 aaPredicted RBP8.7□□□□□ -1.02
VCAN-210ENST00000513960 TCEAL2Q9H3H9 227 aaPredicted RBP8.7□□□□□ -1.02
VCAN-210ENST00000513960 SEMA6CQ9H3T2 930 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 ANKRD10Q9NXR5 420 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 TAS2R4Q9NYW5 299 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 MRM2Q9UI43 246 aaKnown RBP8.7□□□□□ -1.02
VCAN-210ENST00000513960 HS3ST3A1Q9Y663 406 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 NKX2-2O95096 273 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 MAOAP21397 527 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 CDKN2AP42771 156 aaKnown RBP8.7□□□□□ -1.02
VCAN-210ENST00000513960 HHEXQ03014 270 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.7□□□□□ -1.02
VCAN-210ENST00000513960 CEP290O15078 2479 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 PRAMEF26H0Y7S4 382 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 LRP3O75074 770 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 S100A8P05109 93 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 MUC1P15941 1255 aaPredicted RBP8.7□□□□□ -1.02
VCAN-210ENST00000513960 S100PP25815 95 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 PSMB6P28072 239 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 HTR2CP28335 458 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 S100A2P29034 98 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 GPR143P51810 404 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 ULK3Q6PHR2 472 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 SFTPA2Q8IWL1 248 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 GPBAR1Q8TDU6 330 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 TGIF2Q9GZN2 237 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 HAO2Q9NYQ3 351 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 KCNG2Q9UJ96 466 aa8.7□□□□□ -1.02
VCAN-210ENST00000513960 A0A0B4J2E0 115 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 A0A1B0GX12 115 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 A0A1W2PPH5 198 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 RNF222A6NCQ9 220 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 ARG1P05089 322 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 RPS10P46783 165 aaKnown RBP8.69□□□□□ -1.02
VCAN-210ENST00000513960 PJVKQ0ZLH3 352 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 ELOCQ15369 112 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 USF2Q15853 346 aaPredicted RBP8.69□□□□□ -1.02
VCAN-210ENST00000513960 TMPPEQ6ZT21 453 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 ZNF550Q7Z398 422 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 FRMD1Q8N878 549 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 ANKRD9Q96BM1 317 aaPredicted RBP8.69□□□□□ -1.02
VCAN-210ENST00000513960 PQLC2LA1A4F0 135 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 RNASEK-C17orf49H0YIS7 233 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 SULT2B1O00204 365 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 NPY4RP50391 375 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 PPP1CAP62136 330 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 DLX2Q07687 328 aaPredicted RBP8.69□□□□□ -1.02
VCAN-210ENST00000513960 MGAT2Q10469 447 aa8.69□□□□□ -1.02
VCAN-210ENST00000513960 SLC22A6Q4U2R8 563 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms