RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 CELA3BP08861 270 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 MRPL3P09001 348 aaKnown RBP8.71□□□□□ -1.02
NUP54-203ENST00000504173 CECR9P0C854 216 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 CD40P25942 277 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 NAA10P41227 235 aaPredicted RBP8.71□□□□□ -1.02
NUP54-203ENST00000504173 NR1H2P55055 460 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 PSG4Q00888 419 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 BSPH1Q075Z2 132 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 RAB39AQ14964 217 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 DAZAP2Q15038 168 aaPredicted RBP8.71□□□□□ -1.02
NUP54-203ENST00000504173 C3orf36Q3SXR2 165 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 PABPC1L2AQ5JQF8 200 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 C6orf52Q5T4I8 152 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 MEDAGQ5VYS4 303 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 CORO6Q6QEF8 472 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 MEPCEQ7L2J0 689 aaKnown RBP8.71□□□□□ -1.02
NUP54-203ENST00000504173 LINC00346Q8IVM7 164 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 ALDH16A1Q8IZ83 802 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 C8orf59Q8N0T1 100 aaPredicted RBP8.71□□□□□ -1.02
NUP54-203ENST00000504173 FAM169BQ8N8A8 192 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 OR6N2Q8NGY6 317 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 AKR7LQ8NHP1 331 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 TFAP2CQ92754 450 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 RFKQ969G6 155 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 PIK3IP1Q96FE7 263 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 TEAD3Q99594 435 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 KCNS3Q9BQ31 491 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 OR2H1Q9GZK4 316 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 RASSF4Q9H2L5 321 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 CLN6Q9NWW5 311 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 PLEK2Q9NYT0 353 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 AASSQ9UDR5 926 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 WARS2Q9UGM6 360 aaKnown RBP8.71□□□□□ -1.02
NUP54-203ENST00000504173 GDF2Q9UK05 429 aaPredicted RBP8.71□□□□□ -1.02
NUP54-203ENST00000504173 LHFPL6Q9Y693 200 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 TGP01266 2768 aa8.71□□□□□ -1.02
NUP54-203ENST00000504173 SONP18583 2426 aaKnown RBP8.7□□□□□ -1.02
NUP54-203ENST00000504173 HRNRQ86YZ3 2850 aaPredicted RBP8.7□□□□□ -1.02
NUP54-203ENST00000504173 DPRXA6NFQ7 191 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 SNTNA6NMZ2 147 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 ABCD4O14678 606 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 RER1O15258 196 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 SIAH2O43255 324 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 SGCEO43556 437 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 DOK2O60496 412 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 ENTPD6O75354 484 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 GOSR1O95249 250 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 PTHP01270 115 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 SERPINA5P05154 406 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 CD3EP07766 207 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 GNAO1P09471 354 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 GABRB1P18505 474 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 PTAFRP25105 342 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 HTR1FP30939 366 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 APLNRP35414 380 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 RPS27P42677 84 aaKnown RBP8.7□□□□□ -1.02
NUP54-203ENST00000504173 NAAAQ02083 359 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 GGTLC2Q14390 218 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 MAD2L1BPQ15013 274 aaPredicted RBP8.7□□□□□ -1.02
NUP54-203ENST00000504173 OCLNQ16625 522 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 SLC25A30Q5SVS4 291 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 NCMAPQ5T1S8 102 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 SLC18B1Q6NT16 456 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 ZNF774Q6NX45 483 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 TMEM154Q6P9G4 183 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 SHFQ7M4L6 423 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 MYPOPQ86VE0 399 aaPredicted RBP8.7□□□□□ -1.02
NUP54-203ENST00000504173 TIGD4Q8IY51 512 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 SLC30A7Q8NEW0 376 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 GJC3Q8NFK1 279 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 RHOXF1Q8NHV9 184 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 Q96MT0 163 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 ZNF75AQ96N20 296 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 CNN2Q99439 309 aaKnown RBP8.7□□□□□ -1.02
NUP54-203ENST00000504173 WNT5BQ9H1J7 359 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 LIME1Q9H400 295 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 C1orf198Q9H425 327 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 MARCH7Q9H992 704 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 CYB5R1Q9UHQ9 305 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.7□□□□□ -1.02
NUP54-203ENST00000504173 HSPE1-MOB4S4R3N1 261 aa8.7□□□□□ -1.02
NUP54-203ENST00000504173 CRYAAP02489 173 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 PSKH1P11801 424 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 ZNF14P17017 642 aaPredicted RBP8.69□□□□□ -1.02
NUP54-203ENST00000504173 APEX1P27695 318 aaKnown RBP8.69□□□□□ -1.02
NUP54-203ENST00000504173 ATP6V1E1P36543 226 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 HTR5AP47898 357 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 GDI2P50395 445 aaKnown RBP8.69□□□□□ -1.02
NUP54-203ENST00000504173 NUDT6P53370 316 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 ISL1P61371 349 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 HIST1H3AP68431 136 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 SPOCK1Q08629 439 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 POU4F2Q12837 409 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 TMED1Q13445 227 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 EIF2B1Q14232 305 aaKnown RBP8.69□□□□□ -1.02
NUP54-203ENST00000504173 RAB35Q15286 201 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 PCK2Q16822 640 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 TBC1D28Q2M2D7 210 aa8.69□□□□□ -1.02
NUP54-203ENST00000504173 CCDC92Q53HC0 331 aaPredicted RBP8.69□□□□□ -1.02
NUP54-203ENST00000504173 TEX30Q5JUR7 227 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms