RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PGCP20142 388 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TUBG1P23258 451 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR3A2P47893 321 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CAMLGP49069 296 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ACY1Q03154 408 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SKA3Q8IX90 412 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 AKIRIN1Q9H9L7 192 aaPredicted RBP9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SDHAF3Q9NRP4 125 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RXFP3Q9NSD7 469 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MUC6Q6W4X9 2439 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 A0A1B0GX78 115 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF726A6NNF4 738 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GABARAPH6UMI1 98 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FOXS1O43638 330 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR2T1O43869 369 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 AQP8O94778 261 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 IL13RA1P78552 427 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CD226Q15762 336 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR2L13Q8N349 312 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SLC25A45Q8N413 288 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR1S2Q8NGQ3 325 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ANKRD9Q96BM1 317 aaPredicted RBP9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MEGF10Q96KG7 1140 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CNN2Q99439 309 aaKnown RBP9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 KLK11Q9UBX7 282 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 A0A1B0GTH9 108 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CYR61O00622 381 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CCSO14618 274 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PHYHO14832 338 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 AK1P00568 194 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 IGF2P01344 180 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NR2C1P13056 603 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GLB1P16278 677 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MECP2P51608 486 aaKnown RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MEP1BQ16820 701 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SLC25A35Q3KQZ1 300 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LINC00303Q3SY05 128 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TFAP2EQ6VUC0 442 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LINC00696Q6ZRV3 163 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 IFI44Q8TCB0 444 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FBXO17Q96EF6 278 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RSRP1Q9BUV0 290 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PBDC1Q9BVG4 233 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SUCNR1Q9BXA5 334 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 VN1R1Q9GZP7 353 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GSN-AS1Q9NRJ2 163 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MED29Q9NX70 200 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CES1P1Q9UKY3 287 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PUS1Q9Y606 427 aaKnown RBP eCLIP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 A0A087WZY1 265 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SNRPGP15A8MWD9 76 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RAB40ALP0C0E4 278 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CXCL2P19875 107 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NXPH1P58417 271 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CTAG1AP78358 180 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TMEM176BQ3YBM2 270 aaPredicted RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PWWP2BQ6NUJ5 590 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FIP1L1Q6UN15 594 aaKnown RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GLDNQ6ZMI3 551 aaPredicted RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LRRC69Q6ZNQ3 347 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MEPCEQ7L2J0 689 aaKnown RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR4C15Q8NGM1 316 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RAB40AQ8WXH6 277 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR51M1Q9H341 326 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PRO1933Q9H354 126 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GAR1Q9NY12 217 aaKnown RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 KLHL13Q9P2N7 655 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 EPHA6Q9UF33 1036 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 KCNMB2Q9Y691 235 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MTCL1Q9Y4B5 1905 aaKnown RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR2J2O76002 312 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PET100P0DJ07 73 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TCN2P20062 427 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ACTA2P62736 377 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ACTG2P63267 376 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 B3GNTL1Q67FW5 361 aaPredicted RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ARHGAP11AQ6P4F7 1023 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 UQCC3Q6UW78 93 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NDUFAF7Q7L592 441 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR2W3Q7Z3T1 314 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ADAMTS18Q8TE60 1221 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR14A2Q96R54 314 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TEAD3Q99594 435 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PILRAQ9UKJ1 303 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 BTBD17A6NE02 478 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR5H14A6NHG9 310 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 BRINP1O60477 761 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR2F2O95006 317 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SLC34A2O95436 690 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 BDKRB2P30411 391 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 DCTDP32321 178 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TSFMP43897 325 aaKnown RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MMP15P51511 669 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 DCDP81605 110 aaKnown RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR2F1Q13607 317 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 INPP5JQ15735 1006 aaPredicted RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 WDR88Q6ZMY6 472 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR51S1Q8NGJ8 323 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SMIM4Q8WVI0 70 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FAM46BQ96A09 425 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms