RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 LMX1BO60663 402 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 CD37P11049 281 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 DCTDP32321 178 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 DNASE1L1P49184 302 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 PLA2G2CQ5R387 149 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 ANKRD16Q6P6B7 361 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 NOXA1Q86UR1 476 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 SLC25A28Q96A46 364 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 LOXL4Q96JB6 756 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 SGCZQ96LD1 299 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 NKX3-1Q99801 234 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 PCDHGA5Q9Y5G8 931 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 WDFY4Q6ZS81 3184 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 LOC100289279A0A1B0GTE1 492 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 CTAG2O75638 210 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 HPP00738 406 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 ICAM2P13598 275 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 ZNF17P17021 662 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 C2orf76Q3KRA6 126 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 GLT8D1Q68CQ7 371 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 KLHL24Q6TFL4 600 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 DNM1P46Q6ZS02 220 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 BTN2A1Q7KYR7 527 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 BIVMQ86UB2 503 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 OR51A2Q8NGJ7 313 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 GHITMQ9H3K2 345 aa18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 CDV3Q9UKY7 258 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-208ENST00000492980 GMDSO60547 372 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 CBR3O75828 277 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 QDPRP09417 244 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 ACSM4P0C7M7 580 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 CLDN17P56750 224 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 AP3S2P59780 193 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 SSPNQ14714 243 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 TMEM255AQ5JRV8 349 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 B3GNTL1Q67FW5 361 aaPredicted RBP18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 DDA1Q9BW61 102 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 SPRY4Q9C004 299 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 FARSAQ9Y285 508 aaKnown RBP18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 POLR1DQ9Y2S0 133 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 ANKRD20A5PA0PJZ0 165 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 TTRP02766 147 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 CD59P13987 128 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 MRPS15P82914 257 aaKnown RBP18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 KCNMB1Q16558 191 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 ELMOD2Q8IZ81 293 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 PBOV1Q9GZY1 135 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 ZNF275Q9NSD4 429 aaPredicted RBP18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 RYDENQ9NUL5 291 aaKnown RBP18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 ING3Q9NXR8 418 aa18.73■□□□□ 0.59
CCDC88B-208ENST00000492980 A0A0G2JMM0 328 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 TMEM272A0A1B0GTI8 110 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 A0A1W2PPB8 328 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 A0A1W2PRS3 328 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 GGT3PA6NGU5 568 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 KIR3DP1A8MWS1 328 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 H2AFB2P0C5Z0 115 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 JMJD7P0C870 316 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 H3F3CQ6NXT2 135 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 OR2AJ1Q8NGZ0 328 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 SLC17A5Q9NRA2 495 aa18.72■□□□□ 0.59
CCDC88B-208ENST00000492980 CIB4A0PJX0 185 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 NAP1L6A6NFF2 107 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 C9orf172C9J069 976 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 EIF1BO60739 113 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 YES1P07947 543 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 SDHBP21912 280 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 HTR2CP28335 458 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 RAG2P55895 527 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 SF3B4Q15427 424 aaKnown RBP eCLIP18.71■□□□□ 0.593e-6■■■■□ 24.5
CCDC88B-208ENST00000492980 CGGBP1Q9UFW8 167 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 IGHV3-15A0A0B4J1V0 119 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 MEGF11A6BM72 1044 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 ZNF878C9JN71 531 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 TLX3O43711 291 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 GSTT2BP0CG30 244 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 SPOCK1Q08629 439 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 GLYATL3Q5SZD4 288 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 OLFML2AQ68BL7 652 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 SFRP4Q6FHJ7 346 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 CREB3L2Q70SY1 520 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 OR6M1Q8NGM8 313 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 PIGQQ9BRB3 760 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 DIABLOQ9NR28 239 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 ASH2LQ9UBL3 628 aa18.71■□□□□ 0.59
CCDC88B-208ENST00000492980 KIAA1549Q9HCM3 1950 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 P04436 131 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 PSMA6P60900 246 aaKnown RBP18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 RAC1P63000 192 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 GSG1Q2KHT4 349 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 ELFN2Q5R3F8 820 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 NAXDQ8IW45 347 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 OR56B4Q8NH76 319 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 LIN37Q96GY3 246 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 OR2M2Q96R28 347 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 UCN2Q96RP3 112 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 C20orf85Q9H1P6 137 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 GLTPQ9NZD2 209 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 MRPS18BQ9Y676 258 aaKnown RBP18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 A0A0J9YW62 118 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms