RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ACTG2P63267 376 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 MEF2CQ06413 473 aaPredicted RBP1.11□□□□□ -2.23
VPS50-216ENST00000484954 C6orf226Q5I0X4 101 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 STUMQ69YW2 141 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 ZNF101Q8IZC7 436 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 TMEM256Q8N2U0 113 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 METTL13Q8N6R0 699 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 EIF1ADQ8N9N8 165 aaKnown RBP1.11□□□□□ -2.23
VPS50-216ENST00000484954 APCDD1LQ8NCL9 501 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 BHLHE23Q8NDY6 225 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 OR1L6Q8NGR2 347 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 PHOSPHO2Q8TCD6 241 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 KLF14Q8TD94 323 aaPredicted RBP1.11□□□□□ -2.23
VPS50-216ENST00000484954 STMN2Q93045 179 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 NTAN1Q96AB6 310 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 WDR34Q96EX3 536 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 DNAJC1Q96KC8 554 aaKnown RBP1.11□□□□□ -2.23
VPS50-216ENST00000484954 TCEANC2Q96MN5 208 aa1.11□□□□□ -2.23
VPS50-216ENST00000484954 CNTNAP1P78357 1384 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 ARHGEF35A5YM69 484 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 DYNC1I1O14576 645 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 SOX15O60248 233 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 OR5H8P0DN80 308 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 ZNF43P17038 809 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 RAB3BP20337 219 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 HNRNPH3P31942 346 aaKnown RBP1.1□□□□□ -2.23
VPS50-216ENST00000484954 PRPHP41219 470 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 CEBPDP49716 269 aaPredicted RBP1.1□□□□□ -2.23
VPS50-216ENST00000484954 TPMTP51580 245 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 RND2P52198 227 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 GPX6P59796 221 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 CRADDP78560 199 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 BST1Q10588 318 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 MPV17L2Q567V2 206 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 LRRC74BQ6ZQY2 392 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 MS4A15Q8N5U1 240 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 OR2L3Q8NG85 312 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 OR13C2Q8NGS9 318 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 TUBGCP3Q96CW5 907 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 CNDP1Q96KN2 507 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 ZBTB18Q99592 522 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 TM2D3Q9BRN9 247 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 METTL7AQ9H8H3 244 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 NT5MQ9NPB1 228 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 HYPKQ9NX55 129 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 PISDQ9UG56 409 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 SLC7A8Q9UHI5 535 aa1.1□□□□□ -2.23
VPS50-216ENST00000484954 TRMT112Q9UI30 125 aaKnown RBP1.1□□□□□ -2.23
VPS50-216ENST00000484954 DENND4AQ7Z401 1863 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 IGLV1-36A0A0B4J1U3 117 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 ZNF816-ZNF321PA0A0X1KG74 233 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 L7N2F9 121 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 PPP1R2P9O14990 202 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 CHST10O43529 356 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 SERPINA3P01011 423 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 CST1P01037 141 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 CD3GP09693 182 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 CCNB1P14635 433 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 KITLGP21583 273 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 CRYBB2P43320 205 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 PLP1P60201 277 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 UBE2NP61088 152 aaKnown RBP1.09□□□□□ -2.23
VPS50-216ENST00000484954 RPL23AP62750 156 aaKnown RBP1.09□□□□□ -2.23
VPS50-216ENST00000484954 CDK5Q00535 292 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 TWF1Q12792 350 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 ECH1Q13011 328 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 RBMY1FQ15415 496 aaKnown RBP1.09□□□□□ -2.23
VPS50-216ENST00000484954 LRRC23Q53EV4 343 aaPredicted RBP1.09□□□□□ -2.23
VPS50-216ENST00000484954 AVPI1Q5T686 147 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 FBXL13Q8NEE6 735 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 TTLQ8NG68 377 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 OR4F6Q8NGB9 312 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 SEH1LQ96EE3 360 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 IFT74Q96LB3 600 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 SERPINB12Q96P63 405 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 IP6K3Q96PC2 410 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 KLF6Q99612 283 aaPredicted RBP1.09□□□□□ -2.23
VPS50-216ENST00000484954 RBBP8Q99708 897 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 RHOXF2Q9BQY4 288 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 GCOM2Q9BZD3 368 aaPredicted RBP1.09□□□□□ -2.23
VPS50-216ENST00000484954 SUN2Q9UH99 717 aa1.09□□□□□ -2.23
VPS50-216ENST00000484954 TENM1Q9UKZ4 2725 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 TRAV6A0A075B6T7 132 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 CLPXO76031 633 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 TSPAN13O95857 204 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 CRYGBP07316 175 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 CD99P14209 185 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 PTMSP20962 102 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 SSR1P43307 286 aaKnown RBP1.08□□□□□ -2.24
VPS50-216ENST00000484954 PPP1CBP62140 327 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 KCNJ2P63252 427 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 BST2Q10589 180 aaKnown RBP1.08□□□□□ -2.24
VPS50-216ENST00000484954 DDX39BQ13838 428 aaKnown RBP1.08□□□□□ -2.24
VPS50-216ENST00000484954 CEP55Q53EZ4 464 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 SMARCD3Q6STE5 483 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 KDELC1Q6UW63 502 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 C16orf47Q6ZP98 133 aaPredicted RBP1.08□□□□□ -2.24
VPS50-216ENST00000484954 NIPA1Q7RTP0 329 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 CDR2LQ86X02 465 aaPredicted RBP1.08□□□□□ -2.24
VPS50-216ENST00000484954 TGIF2LXQ8IUE1 241 aa1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms