RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 FCRL1Q96LA6 429 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 BMFQ96LC9 184 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 KLHL15Q96M94 604 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 PPP1R3EQ9H7J1 279 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 CYSLTR2Q9NS75 346 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 MBD2Q9UBB5 411 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 DUX4Q9UBX2 424 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TESQ9UGI8 421 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 LHX6Q9UPM6 363 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 USF3Q68DE3 2245 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 SPENQ96T58 3664 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 LOC101059948A0A1B0GTJ6 334 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 SYT5O00445 386 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 NME2P1O60361 137 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 AGR2O95994 175 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 PIPP12273 146 aaPredicted RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 PPP3CBP16298 524 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 ALOX5APP20292 161 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 FBLP22087 321 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 PRPH2P23942 346 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 S100A11P31949 105 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 IKZF1Q13422 519 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 ARHGAP19Q14CB8 494 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 GSG1Q2KHT4 349 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TMEM44Q2T9K0 475 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 WDR38Q5JTN6 314 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 STPG1Q5TH74 334 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 SLC18B1Q6NT16 456 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 C19orf47Q8N9M1 422 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 OR52N1Q8NH53 320 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 ADAMTS14Q8WXS8 1223 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 MR1Q95460 341 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TAAR8Q969N4 342 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 LIN37Q96GY3 246 aaPredicted RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 RBP7Q96R05 134 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 OR2A5Q96R48 311 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 POTEKPQ9BYX7 375 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 PTGES2Q9H7Z7 377 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TMEM45AQ9NWC5 275 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 PLEK2Q9NYT0 353 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 EHFQ9NZC4 300 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 PPP4R1LQ9P1A2 415 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 SLC22A7Q9Y694 548 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TICRRQ7Z2Z1 1910 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 WRBO00258 174 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 BET1O15155 118 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 HMGB3O15347 200 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 NSA2O95478 260 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 S100A9P06702 114 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 CCL2P13500 99 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 CTLA4P16410 223 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 HTR2CP28335 458 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 OTX2P32243 289 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 RBM34P42696 430 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 ZNF136P52737 540 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 ATP1B3P54709 279 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 SEC61A1P61619 476 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 MGAT2Q10469 447 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 CHRFAM7AQ494W8 412 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 FAM76BQ5HYJ3 339 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 RPL22L1Q6P5R6 122 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TMEM71Q6P5X7 295 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TMEM81Q6P7N7 255 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 CA13Q8N1Q1 262 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TMEM104Q8NE00 496 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 FAM71CQ8NEG0 241 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 OR2AE1Q8NHA4 323 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 PPP1R1CQ8WVI7 109 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 MIB2Q96AX9 1013 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 ZC3H10Q96K80 434 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 OR2M2Q96R28 347 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 SOX7Q9BT81 388 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 G6PC3Q9BUM1 346 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 PAPOLGQ9BWT3 736 aaKnown RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 MAGT1Q9H0U3 335 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 SEMA6CQ9H3T2 930 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 C19orf53Q9UNZ5 99 aaPredicted RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 HIF3AQ9Y2N7 669 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 ZNF337Q9Y3M9 751 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TIMM8BQ9Y5J9 83 aaPredicted RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 PUS1Q9Y606 427 aaKnown RBP eCLIP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 RNF215Q9Y6U7 377 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TSC2P49815 1807 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 ARFGEF3Q5TH69 2177 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 LTBP2Q14767 1821 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 TRBV11-1A0A0K0K1C0 115 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 LOC107986453A0A1B0GWG9 222 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 B8ZZF3 427 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 EFSO43281 561 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 ZNF749O43361 778 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 GALR3O60755 368 aaPredicted RBP4.5□□□□□ -1.69
CCDC39-204ENST00000476379 FGF19O95750 216 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 CD14P08571 375 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 OR2T7P0C7T2 308 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 AKAIN1P0CW23 69 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 OR13C7P0DN81 318 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 NAT1P18440 290 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 SLC6A1P30531 599 aa4.5□□□□□ -1.69
CCDC39-204ENST00000476379 MFGE8Q08431 387 aaPredicted RBP4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms