RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 HIST2H3AQ71DI3 136 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 NPEPL1Q8NDH3 523 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 PTP4A1Q93096 173 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 CMBLQ96DG6 245 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 HSH2DQ96JZ2 352 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 C7orf34Q96L11 122 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 JMJD8Q96S16 334 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SLC6A7Q99884 636 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 HOPXQ9BPY8 73 aaPredicted RBP10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 RBM4Q9BWF3 364 aaKnown RBP10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SUCNR1Q9BXA5 334 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 PATZ1Q9HBE1 687 aaKnown RBP10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 VSX1Q9NZR4 365 aaPredicted RBP10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GRHPRQ9UBQ7 328 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 IL19Q9UHD0 177 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ENPP4Q9Y6X5 453 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 J3QW42 95 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 IMPA2O14732 288 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TIMM8AO60220 97 aaPredicted RBP10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 FOXH1O75593 365 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ABHD16AO95870 558 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TXNDC12O95881 172 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 RAC2P15153 192 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GSTM3P21266 225 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SDHAP31040 664 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GPR4P46093 362 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 OMPP47874 163 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GSK3BP49841 420 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ERFP50548 548 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 LCN2P80188 198 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 PAX2Q02962 417 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SCRN3Q0VDG4 424 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 AQP6Q13520 282 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 RSPO1Q2MKA7 263 aaPredicted RBP10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 KLF17Q5JT82 389 aaPredicted RBP10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GPR139Q6DWJ6 353 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 FBXW12Q6X9E4 464 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 PTCHD4Q6ZW05 846 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 CPLX4Q7Z7G2 160 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TREML1Q86YW5 311 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SLC7A6Q92536 515 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 POP5Q969H6 163 aaKnown RBP10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DACT3Q96B18 629 aaPredicted RBP10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DHRS1Q96LJ7 313 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 NDUFAF4Q9P032 175 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ABCD2Q9UBJ2 740 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 EGFL7Q9UHF1 273 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ATPIF1Q9UII2 106 aa10.31□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DOK2O60496 412 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 NDUFB2O95178 105 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 FSTL3O95633 263 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZNF682O95780 498 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SERPINA1P01009 418 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SBK2P0C263 348 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZNF12P17014 697 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TNFRSF1AP19438 455 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 RPL4P36578 427 aaKnown RBP10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 CDKN2AP42771 156 aaKnown RBP10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 HTR5AP47898 357 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SLC7A2P52569 658 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SEC61A1P61619 476 aaKnown RBP10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 UBA52P62987 128 aaKnown RBP10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 PAX8Q06710 450 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZMYND11Q15326 602 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 KRTAP27-1Q3LI81 207 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 COLCA1Q6ZS62 124 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GLB1L2Q8IW92 636 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 OR1F12Q8NHA8 337 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ST7LQ8TDW4 575 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ITLN1Q8WWA0 313 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GCDHQ92947 438 aaPredicted RBP10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 RASD2Q96D21 266 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 COG8Q96MW5 612 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZNF570Q96NI8 536 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DCLRE1CQ96SD1 692 aaKnown RBP10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GPA33Q99795 319 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SYT4Q9H2B2 425 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GCM1Q9NP62 436 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 UBAP1Q9NZ09 502 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TMEM5Q9Y2B1 443 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 COA3Q9Y2R0 106 aaPredicted RBP10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 INSIG2Q9Y5U4 225 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 MEGF8Q7Z7M0 2845 aa10.3□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ISPDA4D126 451 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TMEM178BH3BS89 294 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DCTN6O00399 190 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 XKRYO14609 159 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 RER1O15258 196 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SLC16A7O60669 478 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 KHDRBS3O75525 346 aaKnown RBP10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DBHP09172 617 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 WNT2P09544 360 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 RHCEP18577 417 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 CPT2P23786 658 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 FPR2P25090 351 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 BTG1P62324 171 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ACTG1P63261 375 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZNF154Q13106 437 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 KRR1Q13601 381 aaKnown RBP10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SEC23BQ15437 767 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms