RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 R4GMQ9 66 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 IGSF10Q6WRI0 2623 aa11.3□□□□□ -0.6
VPS13D-205ENST00000473099 ACOD1A6NK06 481 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 OR4C45A6NMZ5 311 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF879B4DU55 563 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 LOC110117498-PIK3R3F6TDL0 507 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 CNOT4O95628 575 aaKnown RBP11.29□□□□□ -0.6
VPS13D-205ENST00000473099 CRHP06850 196 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 CD8BP10966 210 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 SFTPCP11686 197 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 MYL9P24844 172 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 HSD11B1P28845 292 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 OR3A2P47893 321 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 MMP16P51512 607 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 NANOS3P60323 173 aaKnown RBP11.29□□□□□ -0.6
VPS13D-205ENST00000473099 ECH1Q13011 328 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 ACSF3Q4G176 576 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-205ENST00000473099 ACSM3Q53FZ2 586 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 NSUN5P2Q63ZY6 315 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF324BQ6AW86 544 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-205ENST00000473099 CORO6Q6QEF8 472 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF704Q6ZNC4 412 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-205ENST00000473099 TMEM91Q6ZNR0 172 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 DPPA2Q7Z7J5 298 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 TPRA1Q86W33 373 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 CATSPERDQ86XM0 798 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 SLC22A24Q8N4F4 322 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF676Q8N7Q3 588 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 TRMT61AQ96FX7 289 aaKnown RBP11.29□□□□□ -0.6
VPS13D-205ENST00000473099 HDHD2Q9H0R4 259 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 MMP27Q9H306 513 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 SLC7A10Q9NS82 523 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 FRRS1LQ9P0K9 344 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 MALT1Q9UDY8 824 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 CLEC4AQ9UMR7 237 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 RTTNQ86VV8 2226 aa11.29□□□□□ -0.6
VPS13D-205ENST00000473099 MBD3L4A6NDZ8 208 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 MBD3L3A6NE82 208 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 MBD3L5A6NJ08 208 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 SRSF10O75494 262 aaKnown RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 ZFPL1O95159 310 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 RAF1P04049 648 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 UBCP0CG48 685 aaKnown RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 CFL1P23528 166 aaKnown RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 CTSSP25774 331 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 MTNR1BP49286 362 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 RORCP51449 518 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 PSMA6P60900 246 aaKnown RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 GUSBP1Q15486 140 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 LINC00303Q3SY05 128 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 Q499Y3 187 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 SOWAHCQ53LP3 525 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 ZMAT1Q5H9K5 638 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 ELFN2Q5R3F8 820 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 FBXW9Q5XUX1 488 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 UNQ9370/PRO34162Q6UXP9 181 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF813Q6ZN06 617 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 CFAP77Q6ZQR2 320 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 FAM214BQ7L5A3 538 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 NUFIP2Q7Z417 695 aaKnown RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 CEACAM19Q7Z692 300 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 CROCCP3Q8IVE0 287 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 OR5M9Q8NGP3 310 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 OR6K3Q8NGY3 331 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 MBD3L2Q8NHZ7 208 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 GPR148Q8TDV2 347 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 RNF166Q96A37 237 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 KCNJ15Q99712 375 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 PDCD1LG2Q9BQ51 273 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 CXorf56Q9H5V9 222 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 ZNF71Q9NQZ8 489 aaPredicted RBP11.28□□□□□ -0.6
VPS13D-205ENST00000473099 ATPIF1Q9UII2 106 aa11.28□□□□□ -0.6
VPS13D-205ENST00000473099 TRAV1-2A0A0B4J238 106 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 TMEM269A0A1B0GVZ9 245 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 CASKO14936 926 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 CDRT1O95170 752 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 ISG15P05161 165 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 UCHL1P09936 223 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 FAM87AP0C7U9 286 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 MPGP29372 298 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 TGFBR3Q03167 851 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 RAB35Q15286 201 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 ZNF404Q494X3 552 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 SLC36A2Q495M3 483 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 WDR38Q5JTN6 314 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 BCL2L15Q5TBC7 163 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 TMEM244Q5VVB8 128 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 OTPQ5XKR4 325 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 ZNF585AQ6P3V2 769 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 SPATC1Q76KD6 591 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 LINGO2Q7L985 606 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 SLC16A14Q7RTX9 510 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 UBE2J2Q8N2K1 259 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 PRSS35Q8N3Z0 413 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 LRRC18Q8N456 261 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 Q8NA96 180 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 OR10S1Q8NGN2 331 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 MCFD2Q8NI22 146 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 FAM57AQ8TBR7 257 aa11.27□□□□□ -0.61
VPS13D-205ENST00000473099 HSD17B8Q92506 261 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms