RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 COG8Q96MW5 612 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 DCLRE1CQ96SD1 692 aaKnown RBP17.11■□□□□ 0.33
COL9A3-204ENST00000463487 SLC29A1Q99808 456 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 SMPD3Q9NY59 655 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-204ENST00000463487 RAI1Q7Z5J4 1906 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-204ENST00000463487 FBN2P35556 2912 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 SYNGR3O43761 229 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 ABHD16AO95870 558 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 DANCRP0C864 163 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 SERPINF1P36955 418 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 RGS6P49758 472 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 UCP2P55851 309 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 SNRPD2P62316 118 aaKnown RBP17.1■□□□□ 0.33
COL9A3-204ENST00000463487 DBPQ10586 325 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-204ENST00000463487 CCDC92Q53HC0 331 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-204ENST00000463487 TMEM154Q6P9G4 183 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 DTX2Q86UW9 622 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 ZNRF4Q8WWF5 429 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 RFKQ969G6 155 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 ZMYND19Q96E35 227 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-204ENST00000463487 IL4I1Q96RQ9 567 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 ATF6BQ99941 703 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 WDR76Q9H967 626 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 MARCH7Q9H992 704 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 GMPPBQ9Y5P6 360 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 ROS1P08922 2347 aa17.1■□□□□ 0.33
COL9A3-204ENST00000463487 APCP25054 2843 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 LOC100509620A0A075B734 347 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 CASQ2O14958 399 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-204ENST00000463487 MPZL2O60487 215 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 SMPD2O60906 423 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 LCKP06239 509 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 OR4A8P0C604 315 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 FAM157BP0CG42 384 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 SLC2A5P22732 501 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 TUBG1P23258 451 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 PEX2P28328 305 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 THBS4P35443 961 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 NUDT6P53370 316 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 SLC34A1Q06495 639 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 PCK2Q16822 640 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 DEFB113Q30KQ7 82 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 RGS7BPQ6MZT1 257 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-204ENST00000463487 LYPD4Q6UWN0 246 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 CFAP77Q6ZQR2 320 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 MEPCEQ7L2J0 689 aaKnown RBP17.09■□□□□ 0.33
COL9A3-204ENST00000463487 DCXRQ7Z4W1 244 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 GALNT4Q8N4A0 578 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 ZNF454Q8N9F8 522 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 BBS1Q8NFJ9 593 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 SPTSSAQ969W0 71 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 TRMT61AQ96FX7 289 aaKnown RBP17.09■□□□□ 0.33
COL9A3-204ENST00000463487 C4orf45Q96LM5 186 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 TEAD3Q99594 435 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 RNPEPL1Q9HAU8 725 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 TUBG2Q9NRH3 451 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 PMF1-BGLAPU3KQ54 211 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 DSCAMO60469 2012 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 NOTCH2Q04721 2471 aa17.09■□□□□ 0.33
COL9A3-204ENST00000463487 SNTNA6NMZ2 147 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 B9A039 149 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 J3QW42 95 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 M0R129 80 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 SOD3P08294 240 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 SLC15A1P46059 708 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 EFNB1P98172 346 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 EIF2B1Q14232 305 aaKnown RBP17.08■□□□□ 0.32
COL9A3-204ENST00000463487 TAF13Q15543 124 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 EFNB3Q15768 340 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 ADIPOQQ15848 244 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 LPCAT4Q643R3 524 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 TIGD4Q8IY51 512 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 PAQR4Q8N4S7 273 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-204ENST00000463487 OR1J1Q8NGS3 322 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 MBOAT4Q96T53 435 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 APOL4Q9BPW4 351 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 TRAF4Q9BUZ4 470 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-204ENST00000463487 VCX3BQ9H321 246 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 PLK3Q9H4B4 646 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 TBCCD1Q9NVR7 557 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 GPR160Q9UJ42 338 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 GRIP1Q9Y3R0 1128 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 TMEM14AQ9Y6G1 99 aa17.08■□□□□ 0.32
COL9A3-204ENST00000463487 SPG11Q96JI7 2443 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 AKAP6Q13023 2319 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 PLCE1Q9P212 2302 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 ZNF878C9JN71 531 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 H3BSA7 217 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 ICMTO60725 284 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 TPTEP56180 551 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 POU4F2Q12837 409 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 OGFRL1Q5TC84 451 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-204ENST00000463487 AADACL4Q5VUY2 407 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 MEDAGQ5VYS4 303 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 RHOUQ7L0Q8 258 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 SLC16A9Q7RTY1 509 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 DPY19L4Q7Z388 723 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 ABHD4Q8TB40 342 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 MRPL24Q96A35 216 aaKnown RBP17.07■□□□□ 0.32
COL9A3-204ENST00000463487 CNN2Q99439 309 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms