RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 FAM186AA6NE01 2351 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 SPTBN2O15020 2390 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 GXYLT2A0PJZ3 443 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 ZFPL1O95159 310 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 CD74P04233 296 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 CBR1P16152 277 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 ADRA2CP18825 462 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 PSMB10P40306 273 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 PMELP40967 661 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 DEFA6Q01524 100 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 PJVKQ0ZLH3 352 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 ERV3-1Q14264 604 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 OR1Q1Q15612 314 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 NKAPLQ5M9Q1 402 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 STEAP1BQ6NZ63 245 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 ARHGAP11AQ6P4F7 1023 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 DMRTC2Q8IXT2 367 aaPredicted RBP10.03□□□□□ -0.8
CUX1-204ENST00000393824 C19orf47Q8N9M1 422 aaKnown RBP10.03□□□□□ -0.8
CUX1-204ENST00000393824 ZSCAN1Q8NBB4 408 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 MFSD9Q8NBP5 474 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 PPP1R1CQ8WVI7 109 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 CCDC3Q9BQI4 270 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 NRIP2Q9BQI9 281 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 SEMA6CQ9H3T2 930 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 TREM1Q9NP99 234 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 MED31Q9Y3C7 131 aa10.03□□□□□ -0.8
CUX1-204ENST00000393824 OR2AT4A6NND4 320 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 MCIDASD6RGH6 385 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 PHYHO14832 338 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 OR2T1O43869 369 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 IGHV2-5P01817 119 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 CD3DP04234 171 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 C8orf89P0DMQ9 161 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 ATXN8OSP0DMR3 200 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 RCC1P18754 421 aaPredicted RBP10.02□□□□□ -0.8
CUX1-204ENST00000393824 CLDN6P56747 220 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 SPCS3P61009 180 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 CCL7P80098 99 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 KLHL26Q53HC5 615 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 OR2B11Q5JQS5 317 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 ARMC6Q6NXE6 501 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 DRAM2Q6UX65 266 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 ZNF619Q8N2I2 560 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 OR4K14Q8NGD5 310 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 ZCCHC10Q8TBK6 192 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 PAQR8Q8TEZ7 354 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 TM4SF19Q96DZ7 209 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 PIK3IP1Q96FE7 263 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 LOXL4Q96JB6 756 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 PFDN5Q99471 154 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 ZFYVE21Q9BQ24 234 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 WDR77Q9BQA1 342 aaPredicted RBP10.02□□□□□ -0.8
CUX1-204ENST00000393824 DUSP23Q9BVJ7 150 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 TMEM27Q9HBJ8 222 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 CBY1Q9Y3M2 126 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 DMRT1Q9Y5R6 373 aa10.02□□□□□ -0.8
CUX1-204ENST00000393824 ZNF860A6NHJ4 632 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 TPT1P13693 172 aaKnown RBP10.02□□□□□ -0.81
CUX1-204ENST00000393824 CERS1P27544 350 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 SLC6A6P31641 620 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 MAGEB1P43366 347 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 GABRA4P48169 554 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 NANOS3P60323 173 aaKnown RBP10.02□□□□□ -0.81
CUX1-204ENST00000393824 FABP9Q0Z7S8 132 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 PON3Q15166 354 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 GFOD2Q3B7J2 385 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 Q499Y3 187 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 RNF44Q7L0R7 432 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 SSX9Q7RTT3 188 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 LRRTM1Q86UE6 522 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 TMEM200AQ86VY9 491 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 WDSUB1Q8N9V3 476 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 INO80EQ8NBZ0 244 aaPredicted RBP10.02□□□□□ -0.81
CUX1-204ENST00000393824 SLC16A11Q8NCK7 471 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 CDS1Q92903 461 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 RNF166Q96A37 237 aaPredicted RBP10.02□□□□□ -0.81
CUX1-204ENST00000393824 SDF2Q99470 211 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 EDEM2Q9BV94 578 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 POTEKPQ9BYX7 375 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 ZNF350Q9GZX5 532 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 FKRPQ9H9S5 495 aa10.02□□□□□ -0.81
CUX1-204ENST00000393824 TRAV27A0A087WT01 109 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 A0A1W2PS29 197 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 CTAG2O75638 210 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 FAM157CP0CG43 387 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 ZNF888P0CJ79 500 aaPredicted RBP10.01□□□□□ -0.81
CUX1-204ENST00000393824 CD59P13987 128 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 NID1P14543 1247 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 PRSS3P35030 304 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 ATP1B3P54709 279 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 TAS2R60P59551 318 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 ACY1Q03154 408 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 PLA2G7Q13093 441 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 CHAF1BQ13112 559 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 DHRS2Q13268 280 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 NR0B2Q15466 257 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 PNLIPRP3Q17RR3 467 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 ACER2Q5QJU3 275 aa10.01□□□□□ -0.81
CUX1-204ENST00000393824 EXOSC6Q5RKV6 272 aaKnown RBP10.01□□□□□ -0.81
CUX1-204ENST00000393824 RABEPKQ7Z6M1 372 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms