RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PATL1Q86TB9 770 aaKnown RBP11.56□□□□□ -0.56
VPS29-201ENST00000360579 FUNDC1Q8IVP5 155 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 C1orf87Q8N0U7 546 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 ATG16L2Q8NAA4 619 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 TBC1D15Q8TC07 691 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 RASSF5Q8WWW0 418 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 LIPHQ8WWY8 451 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 PTP4A1Q93096 173 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 HAVCR1Q96D42 359 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 PRSS27Q9BQR3 290 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 TCF7L1Q9HCS4 588 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 CCDC167Q9P0B6 97 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 ASH2LQ9UBL3 628 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 CLN8Q9UBY8 286 aa11.56□□□□□ -0.56
VPS29-201ENST00000360579 J3QW42 95 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 PHYHO14832 338 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 POLR3GO15318 223 aaPredicted RBP11.55□□□□□ -0.56
VPS29-201ENST00000360579 TSPAN19P0C672 248 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 RBMXP38159 391 aaKnown RBP11.55□□□□□ -0.56
VPS29-201ENST00000360579 SRP9P49458 86 aaKnown RBP11.55□□□□□ -0.56
VPS29-201ENST00000360579 FGF12P61328 243 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 SCRN3Q0VDG4 424 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 ZNF181Q2M3W8 571 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 ALG10Q5BKT4 473 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 WDR93Q6P2C0 686 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 EPGNQ6UW88 154 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 FOXL2NBQ6ZUU3 175 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 FITM2Q8N6M3 262 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 OR4D11Q8NGI4 311 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 MOSPD2Q8NHP6 518 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 SLC26A7Q8TE54 656 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 CPPED1Q9BRF8 314 aaPredicted RBP11.55□□□□□ -0.56
VPS29-201ENST00000360579 TMEM246Q9BRR3 403 aa11.55□□□□□ -0.56
VPS29-201ENST00000360579 A0A1W2PPL8 197 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 TMEM120BA0PK00 339 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 P2RY10O00398 339 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 TNFRSF13BO14836 293 aaPredicted RBP11.54□□□□□ -0.56
VPS29-201ENST00000360579 ENSAO43768 121 aaKnown RBP11.54□□□□□ -0.56
VPS29-201ENST00000360579 CYB5R3P00387 301 aaPredicted RBP11.54□□□□□ -0.56
VPS29-201ENST00000360579 RAC2P15153 192 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 HTR5AP47898 357 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 KRTAP10-3P60369 221 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 RPL27P61353 136 aaKnown RBP11.54□□□□□ -0.56
VPS29-201ENST00000360579 C2orf68Q2NKX9 166 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 ZNF404Q494X3 552 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 RUNDC3AQ59EK9 446 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 INTS11Q5TA45 600 aaKnown RBP11.54□□□□□ -0.56
VPS29-201ENST00000360579 VASH1Q7L8A9 365 aaPredicted RBP11.54□□□□□ -0.56
VPS29-201ENST00000360579 TSPYL5Q86VY4 417 aaPredicted RBP11.54□□□□□ -0.56
VPS29-201ENST00000360579 C1QL4Q86Z23 238 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 OR13G1Q8NGZ3 307 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 PFN4Q8NHR9 129 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 LINC01006Q8NI28 216 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 TMEM239Q8WW34 195 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 GATAD2BQ8WXI9 593 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 MEGF10Q96KG7 1140 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 POLR2J2Q9GZM3 115 aaKnown RBP11.54□□□□□ -0.56
VPS29-201ENST00000360579 POLR2J3Q9H1A7 115 aaKnown RBP11.54□□□□□ -0.56
VPS29-201ENST00000360579 POFUT1Q9H488 388 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 USH1CQ9Y6N9 552 aa11.54□□□□□ -0.56
VPS29-201ENST00000360579 HTR3EA5X5Y0 456 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 C5orf63A6NC05 138 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 A6NIZ1 184 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 DOK2O60496 412 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 ZNF205O95201 554 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 LIPFP07098 398 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 THRBP10828 461 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 NPY4RP50391 375 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 SLC18A1P54219 525 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 PROK1P58294 105 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 TAS2R41P59536 307 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 RAP1BP61224 184 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 RAP1AP62834 184 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 TOP3AQ13472 1001 aaPredicted RBP11.53□□□□□ -0.56
VPS29-201ENST00000360579 ENDOGQ14249 297 aaKnown RBP11.53□□□□□ -0.56
VPS29-201ENST00000360579 CD276Q5ZPR3 534 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 WDR25Q64LD2 544 aaPredicted RBP11.53□□□□□ -0.56
VPS29-201ENST00000360579 DCDC5Q6ZRR9 648 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 OR5L1Q8NGL2 311 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 ZNF420Q8TAQ5 688 aaPredicted RBP11.53□□□□□ -0.56
VPS29-201ENST00000360579 TMEM255BQ8WV15 326 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 C10orf82Q8WW14 230 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 PCGF1Q9BSM1 259 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 TRIM15Q9C019 465 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 POLE4Q9NR33 117 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 C20orf141Q9NUB4 165 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 HIF3AQ9Y2N7 669 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 STARD10Q9Y365 291 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 MED31Q9Y3C7 131 aa11.53□□□□□ -0.56
VPS29-201ENST00000360579 NBEAL2Q6ZNJ1 2754 aa11.52□□□□□ -0.56
VPS29-201ENST00000360579 SGCEO43556 437 aa11.52□□□□□ -0.57
VPS29-201ENST00000360579 GPR137BO60478 399 aa11.52□□□□□ -0.57
VPS29-201ENST00000360579 OR5F1O95221 314 aa11.52□□□□□ -0.57
VPS29-201ENST00000360579 TSPAN15O95858 294 aa11.52□□□□□ -0.57
VPS29-201ENST00000360579 IRF2P14316 349 aa11.52□□□□□ -0.57
VPS29-201ENST00000360579 RGS6P49758 472 aa11.52□□□□□ -0.57
VPS29-201ENST00000360579 DLEU7Q6UYE1 221 aa11.52□□□□□ -0.57
VPS29-201ENST00000360579 NKAIN4Q8IVV8 208 aa11.52□□□□□ -0.57
VPS29-201ENST00000360579 PCYOX1LQ8NBM8 494 aa11.52□□□□□ -0.57
VPS29-201ENST00000360579 OR8G5Q8NG78 346 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms