RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 MS4A3Q96HJ5 214 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 LRFN5Q96NI6 719 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 SEC22CQ9BRL7 303 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 P4HTMQ9NXG6 502 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 VSX1Q9NZR4 365 aaPredicted RBP11.2□□□□□ -0.62
LIMK1-201ENST00000336180 EXPH5Q8NEV8 1989 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 RAB19A4D1S5 217 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 SMAD9O15198 467 aaKnown RBP11.2□□□□□ -0.62
LIMK1-201ENST00000336180 GMDSO60547 372 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 ITGA5P08648 1049 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 CD59P13987 128 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 NUBP1P53384 320 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 C6orf15Q6UXA7 325 aaPredicted RBP11.2□□□□□ -0.62
LIMK1-201ENST00000336180 UNQ9370/PRO34162Q6UXP9 181 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 BIVMQ86UB2 503 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 TOMM5Q8N4H5 51 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 ZBTB44Q8NCP5 570 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 ACOT12Q8WYK0 555 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 YIPF5Q969M3 257 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 THOC3Q96J01 351 aaKnown RBP11.2□□□□□ -0.62
LIMK1-201ENST00000336180 DEPPQ9NTK1 212 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 ALKBH4Q9NXW9 302 aa11.2□□□□□ -0.62
LIMK1-201ENST00000336180 PPIEQ9UNP9 301 aaKnown RBP11.2□□□□□ -0.62
LIMK1-201ENST00000336180 TRAV1-2A0A0B4J238 106 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 DKK1O94907 266 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 C9orf135Q5VTT2 229 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 LRRTM1Q86UE6 522 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 LINC00518Q8N0U6 118 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 OR13C3Q8NGS6 347 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 OR14L1PQ8NHC6 308 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 SGK3Q96BR1 496 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 MRGPRX4Q96LA9 322 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 RBFOX1Q9NWB1 397 aaKnown RBP11.19□□□□□ -0.62
LIMK1-201ENST00000336180 AKAP7Q9P0M2 348 aaPredicted RBP11.19□□□□□ -0.62
LIMK1-201ENST00000336180 DHDHQ9UQ10 334 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 PCDHGA9Q9Y5G4 932 aaKnown RBP11.19□□□□□ -0.62
LIMK1-201ENST00000336180 LOC107986453A0A1B0GWG9 222 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 GPRIN2O60269 458 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 GATBO75879 557 aaKnown RBP11.19□□□□□ -0.62
LIMK1-201ENST00000336180 CELA3AP09093 270 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 LCN1P31025 176 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 DLSTP36957 453 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 SELENOPP49908 381 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 DAP3P51398 398 aaKnown RBP11.19□□□□□ -0.62
LIMK1-201ENST00000336180 OR10S1Q8NGN2 331 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 OR6N1Q8NGY5 312 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 OR6F1Q8NGZ6 308 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 OR8S1Q8NH09 359 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 SLAMF6Q96DU3 332 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 SLC25A44Q96H78 314 aaPredicted RBP11.19□□□□□ -0.62
LIMK1-201ENST00000336180 RBP7Q96R05 134 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 EDEM2Q9BV94 578 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 RBM24Q9BX46 236 aaKnown RBP11.19□□□□□ -0.62
LIMK1-201ENST00000336180 ZNF700Q9H0M5 742 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 TMEM14AQ9Y6G1 99 aa11.19□□□□□ -0.62
LIMK1-201ENST00000336180 A0A0J9YW62 118 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 INMT-MINDY4F8WBC2 141 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 TRAF3IP2O43734 574 aaPredicted RBP11.18□□□□□ -0.62
LIMK1-201ENST00000336180 ZIC3O60481 467 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 SPINK2P20155 84 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 CRABP1P29762 137 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 GDNFP39905 211 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 SLC36A2Q495M3 483 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 TMEM69Q5SWH9 247 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 OPN5Q6U736 354 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 DVL3Q92997 716 aaPredicted RBP11.18□□□□□ -0.62
LIMK1-201ENST00000336180 FGGYQ96C11 551 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 ST6GAL2Q96JF0 529 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 FAM71F1Q96KD3 344 aaPredicted RBP11.18□□□□□ -0.62
LIMK1-201ENST00000336180 SRXN1Q9BYN0 137 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 SLITRK2Q9H156 845 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 WDR54Q9H977 334 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 FAM86C1Q9NVL1 165 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 ZNF221Q9UK13 617 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 SPATA2Q9UM82 520 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 FARSAQ9Y285 508 aaKnown RBP11.18□□□□□ -0.62
LIMK1-201ENST00000336180 RP1L1Q8IWN7 2480 aaPredicted RBP11.18□□□□□ -0.62
LIMK1-201ENST00000336180 PCSK5Q92824 1860 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 COL5A1P20908 1838 aaPredicted RBP11.18□□□□□ -0.62
LIMK1-201ENST00000336180 ZNF726A6NNF4 738 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 FAM166BA8MTA8 275 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 AIPO00170 330 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 KHDRBS3O75525 346 aaKnown RBP11.18□□□□□ -0.62
LIMK1-201ENST00000336180 DCTDP32321 178 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 SNRPD2P62316 118 aaKnown RBP11.18□□□□□ -0.62
LIMK1-201ENST00000336180 C3AR1Q16581 482 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 Q3ZCU0 254 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 CDCP2Q5VXM1 449 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 MZT2BQ6NZ67 158 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 NAXDQ8IW45 347 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 SETD6Q8TBK2 473 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 MCHR2Q969V1 340 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 NXT1Q9UKK6 140 aaKnown RBP11.18□□□□□ -0.62
LIMK1-201ENST00000336180 OR52A1Q9UKL2 312 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 CACNG2Q9Y698 323 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 LOC102723996A0A087X1L8 192 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 ST8SIA5O15466 376 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 GALP22466 123 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 LAP3P28838 519 aa11.18□□□□□ -0.62
LIMK1-201ENST00000336180 RBMS1P29558 406 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms