RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 LAPTM4AQ15012 233 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HIST3H3Q16695 136 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 AWAT1Q58HT5 328 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 LYPLAL1Q5VWZ2 237 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF605Q86T29 641 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SLC39A11Q8N1S5 342 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HAVCR2Q8TDQ0 301 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 RNF133Q8WVZ7 376 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 RAB39BQ96DA2 213 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 FAM103A1Q9BTL3 118 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 POPDC2Q9HBU9 364 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 GCM1Q9NP62 436 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 GABRQQ9UN88 632 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 PNPLA6Q8IY17 1366 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 KLK1P06870 262 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR4A8P0C604 315 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OC90Q02509 493 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 UNC50Q53HI1 259 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 LILRA2Q8N149 483 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 LRRC75AQ8NAA5 344 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 PDXPQ96GD0 296 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 DCAF13Q9NV06 445 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CSNK1G3Q9Y6M4 447 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 FYCO1Q9BQS8 1478 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR5H15A6NDH6 313 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR5H1A6NKK0 313 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HEPACAM2A8MVW5 462 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 M0R1X1 148 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SLC10A3P09131 477 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ACRP10323 421 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ATP1B2P14415 290 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 RPL12P30050 165 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 C1orf195Q5TG92 126 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HES3Q5TGS1 186 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ATG4DQ86TL0 474 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ISCA2Q86U28 154 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SLC35G3Q8N808 338 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CDRT4Q8N9R6 151 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF114Q8NC26 417 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR2Z1Q8NG97 314 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR1J4Q8NGS1 313 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 PGLYRP3Q96LB9 341 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 PCDHB18PQ96TA0 734 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR5V1Q9UGF6 321 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 KLHL21Q9UJP4 597 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 BOKQ9UMX3 212 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CNTN6Q9UQ52 1028 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SNX11Q9Y5W9 270 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 FAM135AQ9P2D6 1515 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 GPR25O00155 361 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SLC25A12O75746 678 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 RFX5P48382 616 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 RPL7L1Q6DKI1 246 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 JSRP1Q96MG2 331 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SYT3Q9BQG1 590 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 GSX2Q9BZM3 304 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ZDHHC7Q9NXF8 308 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 FBXO7Q9Y3I1 522 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TRAV19A0A0A6YYK7 116 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 hCG_38984A0A1B0GV85 526 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 C7orf71A4D174 169 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 PROB1E7EW31 1015 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CTAG2O75638 210 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 EDN1P05305 212 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SCGB1A1P11684 91 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CYB561P49447 251 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CYP2J2P51589 502 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM240Q5SV17 173 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TMUB2Q71RG4 321 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 MRPL55Q7Z7F7 128 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR13J1Q8NGT2 312 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HMGCLL1Q8TB92 370 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 LINC01599Q8WXQ3 324 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 IP6K3Q96PC2 410 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 SEPHS2Q99611 448 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 IMP3Q9NV31 184 aaKnown RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM56-RWDD3S4R434 201 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 CHD1O14646 1710 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 FABP7O15540 132 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 RGS11O94810 467 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 PRSS56P0CW18 603 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 FCGR2BP31994 310 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 UBE2V1Q13404 147 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TRIM40Q6P9F5 258 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TEX38Q6PEX7 206 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TEX29Q8N6K0 151 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 KRTCAP2Q8N6L1 136 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 OR6K2Q8NGY2 324 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 HIST1H2AAQ96QV6 131 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 NODALQ96S42 347 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ORAI3Q9BRQ5 295 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ALOXE3Q9BYJ1 711 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF341Q9BYN7 854 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 EDA2RQ9HAV5 297 aa3.25□□□□□ -1.89
SCN1A-221ENST00000641996 ZBTB20Q9HC78 741 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-221ENST00000641996 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 A0A1W2PPC4 97 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 H0YGN5 161 aa3.24□□□□□ -1.89
SCN1A-221ENST00000641996 MRPL3P09001 348 aaKnown RBP3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms