RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 FAAHO00519 579 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SOX15O60248 233 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 LCATP04180 440 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SMIM18P0DKX4 95 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 KDELR1P24390 212 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ACKR3P25106 362 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 MIPP30301 263 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TNFSF10P50591 281 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF252P-AS1Q0IIN9 211 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 HSPB3Q12988 150 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PXDC1Q5TGL8 231 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SIGIRRQ6IA17 410 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 C15orf52Q6ZUT6 534 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 LRRTM1Q86UE6 522 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ACVR1CQ8NER5 493 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 DTD1Q8TEA8 209 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 C10orf82Q8WW14 230 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF707Q96C28 371 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 MENTQ9BUN1 341 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SEBOXQ9HB31 216 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 HRASLSQ9HDD0 168 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ATP23Q9Y6H3 246 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 CEPT1Q9Y6K0 416 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 CNTNAP1P78357 1384 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PRAMEF25A6NGN4 478 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SERINC4A6NH21 518 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 NDUFS8O00217 210 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 GLAP06280 429 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR8U8P0C7N1 319 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 BMP5P22003 454 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 RPS5P46782 204 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 HCCSP53701 268 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 KCNMB1Q16558 191 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF662Q6ZS27 426 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 APCDD1Q8J025 514 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 MUC20Q8N307 709 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 GNPDA2Q8TDQ7 276 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 FGF11Q92914 225 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 KISS1RQ969F8 398 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 SLC25A38Q96DW6 304 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 MCOLN1Q9GZU1 580 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 MMP28Q9H239 520 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 IKZF5Q9H5V7 419 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ARHGAP23Q9P227 1491 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 UBR1Q8IWV7 1749 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 A0A087X0M5 115 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 A0A1B0GX30 115 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF814B7Z6K7 855 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 HPGDSO60760 199 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 UBL3O95164 117 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SERPINA5P05154 406 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF8P17098 575 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 DPP4P27487 766 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 IL13P35225 146 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 HMGCLP35914 325 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 CST6Q15828 149 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SFRP5Q5T4F7 317 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SLC18B1Q6NT16 456 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 KLHDC8BQ8IXV7 354 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ACBD7Q8N6N7 88 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZBTB34Q8NCN2 500 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR51G2Q8NGK0 314 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR13D1Q8NGV5 346 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PHYHIPLQ96FC7 376 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PERPQ96FX8 193 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ANKRD19PQ9H560 264 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SLC52A3Q9NQ40 469 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PEMTQ9UBM1 199 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PPP1R3CQ9UQK1 317 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TCAF1Q9Y4C2 921 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF320A2RRD8 509 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 OR2T8A6NH00 312 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 G3V3Y1 287 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 GALR3O60755 368 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 SLCO2B1O94956 709 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 S1PR2O95136 353 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ADRB2P07550 413 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SLC25A6P12236 298 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 VDAC1P21796 283 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 HOXD3P31249 432 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 OPRL1P41146 370 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TNFSF9P41273 254 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 XCR1P46094 333 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 MEOX2P50222 304 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 NR0B1P51843 470 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 EDDM3BP56851 147 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 KRTDAPP60985 99 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 FCN2Q15485 313 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 POU2AF1Q16633 256 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SLC25A30Q5SVS4 291 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SLC16A13Q7RTY0 426 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TMPRSS9Q7Z410 1059 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TMEM150AQ86TG1 271 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 LSRQ86X29 649 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 ZNF573Q86YE8 665 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 UBAC2Q8NBM4 344 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 C1orf162Q8NEQ5 155 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 OR10V1Q8NGI7 309 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ARRDC2Q8TBH0 407 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TMEM230Q96A57 120 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms