RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 DNM1P34Q6PK57 102 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 ZNF704Q6ZNC4 412 aaPredicted RBP11.44□□□□□ -0.58
LINC00540-203ENST00000631321 CHMP1BQ7LBR1 199 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 SCARB1Q8WTV0 552 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 ST8SIA1Q92185 356 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 EDAQ92838 391 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 DVL3Q92997 716 aaPredicted RBP11.44□□□□□ -0.58
LINC00540-203ENST00000631321 EDEM2Q9BV94 578 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 RDH8Q9NYR8 311 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 MKL2Q9ULH7 1088 aa11.44□□□□□ -0.58
LINC00540-203ENST00000631321 GON4LQ3T8J9 2241 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 PCDH15Q96QU1 1955 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 LOC105371267A0A1B0GV96 52 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 LOC107986453A0A1B0GWG9 222 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 ANKUB1A6NFN9 424 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 RAB3DO95716 219 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 NMBP08949 121 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 SFRP5Q5T4F7 317 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 TMEM205Q6UW68 189 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 PRSS42Q7Z5A4 293 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 PRSS58Q8IYP2 241 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 ZNF248Q8NDW4 579 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 OR51A2Q8NGJ7 313 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 OR13C3Q8NGS6 347 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 OR8S1Q8NH09 359 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 MFSD8Q8NHS3 518 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 TNFAIP8L1Q8WVP5 186 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 KCNK17Q96T54 332 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 ZNF224Q9NZL3 707 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 CGGBP1Q9UFW8 167 aaPredicted RBP11.43□□□□□ -0.58
LINC00540-203ENST00000631321 OR52A1Q9UKL2 312 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 EMC9Q9Y3B6 208 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 SOX1O00570 391 aaPredicted RBP11.43□□□□□ -0.58
LINC00540-203ENST00000631321 ARPC5O15511 151 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 DUX1O43812 170 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 SDC3O75056 442 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 PIAS2O75928 621 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 ZNF735P0CB33 412 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 ZNF823P16415 610 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 RAB6AP20340 208 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 IL11P20809 199 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 DNASE1L1P49184 302 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 DAP3P51398 398 aaKnown RBP11.43□□□□□ -0.58
LINC00540-203ENST00000631321 CAPZA1P52907 286 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 SUMO3P55854 103 aaPredicted RBP11.43□□□□□ -0.58
LINC00540-203ENST00000631321 GMFBP60983 142 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 TMEM244Q5VVB8 128 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 LANCL3Q6ZV70 420 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 SLC38A6Q8IZM9 456 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 NKAIN3Q8N8D7 197 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 CCDC120Q96HB5 630 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 DPYSL5Q9BPU6 564 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 POFUT1Q9H488 388 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 LMAN1LQ9HAT1 526 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 MED11Q9P086 117 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 KCNMB2Q9Y691 235 aa11.43□□□□□ -0.58
LINC00540-203ENST00000631321 OR4E1P0C645 316 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 RPA2P15927 270 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 POU3F2P20265 443 aaPredicted RBP11.42□□□□□ -0.58
LINC00540-203ENST00000631321 UBE2MP61081 183 aaKnown RBP11.42□□□□□ -0.58
LINC00540-203ENST00000631321 RNF4P78317 190 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 OC90Q02509 493 aaPredicted RBP11.42□□□□□ -0.58
LINC00540-203ENST00000631321 PMPCAQ10713 525 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 C4orf46Q504U0 113 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 WDR45BQ5MNZ6 344 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 C1orf189Q5VU69 101 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 H1FNTQ75WM6 255 aaPredicted RBP11.42□□□□□ -0.58
LINC00540-203ENST00000631321 ZNF627Q7L945 461 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 DCXRQ7Z4W1 244 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 GLRX5Q86SX6 157 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 KMT5CQ86Y97 462 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 GALNT16Q8N428 558 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 FOXRED1Q96CU9 486 aaPredicted RBP11.42□□□□□ -0.58
LINC00540-203ENST00000631321 NKX3-1Q99801 234 aaPredicted RBP11.42□□□□□ -0.58
LINC00540-203ENST00000631321 TGIF2Q9GZN2 237 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 ARL6Q9H0F7 186 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 TMEM138Q9NPI0 162 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 SDHAF2Q9NX18 166 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 CEP290O15078 2479 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 SEC16AO15027 2179 aa11.42□□□□□ -0.58
LINC00540-203ENST00000631321 FXYD6-FXYD2A0A087WZ82 144 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 TMEM82A0PJX8 343 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 ETV2O00321 342 aaPredicted RBP11.41□□□□□ -0.58
LINC00540-203ENST00000631321 SCO1O75880 301 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 UBCP0CG48 685 aaKnown RBP11.41□□□□□ -0.58
LINC00540-203ENST00000631321 SRFP11831 508 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 ZP3P21754 424 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 APOBEC1P41238 236 aaKnown RBP11.41□□□□□ -0.58
LINC00540-203ENST00000631321 MMP16P51512 607 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 SRSF4Q08170 494 aaKnown RBP11.41□□□□□ -0.58
LINC00540-203ENST00000631321 PHF19Q5T6S3 580 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 COX15Q7KZN9 410 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 WDFY1Q8IWB7 410 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 RNF133Q8WVZ7 376 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 ZNF501Q96CX3 271 aaPredicted RBP11.41□□□□□ -0.58
LINC00540-203ENST00000631321 FXYD6Q9H0Q3 95 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 FANCFQ9NPI8 374 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 CTSFQ9UBX1 484 aa11.41□□□□□ -0.58
LINC00540-203ENST00000631321 SPEF1Q9Y4P9 236 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms