RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 MOGAT3Q86VF5 341 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 LINC00346Q8IVM7 164 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 BOD1L2Q8IYS8 172 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 H1FOOQ8IZA3 346 aaPredicted RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 C1orf87Q8N0U7 546 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 LYG1Q8N1E2 194 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 MTURNQ8N3F0 131 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 TMEM156Q8N614 296 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 FRMD1Q8N878 549 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 OR5L1Q8NGL2 311 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 OR4A15Q8NGL6 344 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 OR10R2Q8NGX6 335 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 OR4S2Q8NH73 311 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 OR14L1PQ8NHC6 308 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 C16orf52Q8NHV5 167 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 PIGXQ8TBF5 258 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 MAPK15Q8TD08 544 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 HPSE2Q8WWQ2 592 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ASB17Q8WXJ9 295 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 TFGQ92734 400 aaPredicted RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 ARL11Q969Q4 196 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 FAM46BQ96A09 425 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 TMEM186Q96B77 213 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 PINX1Q96BK5 328 aaKnown RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 NTNG2Q96CW9 530 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 MOCOSQ96EN8 888 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 PHYHIPLQ96FC7 376 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ZNF419Q96HQ0 510 aaPredicted RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 KAZALD1Q96I82 304 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 POM121L2Q96KW2 1035 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 TECTBQ96PL2 329 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 OR2M4Q96R27 311 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 DDOQ99489 341 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SLC6A7Q99884 636 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 NICN1Q9BSH3 213 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ADAT1Q9BUB4 502 aaKnown RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 RIOK2Q9BVS4 552 aaKnown RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 TRMT61BQ9BVS5 477 aaKnown RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 FNDC11Q9BVV2 318 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 COLEC11Q9BWP8 271 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 C20orf27Q9GZN8 174 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ZNF350Q9GZX5 532 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 HRH4Q9H3N8 390 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SRMSQ9H3Y6 488 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 DHX35Q9H5Z1 703 aaKnown RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 RPF1Q9H9Y2 349 aaKnown RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 IL1RL2Q9HB29 575 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SLC25A19Q9HC21 320 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 CYSLTR2Q9NS75 346 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 CBLN4Q9NTU7 201 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 OSER1Q9NX31 292 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 P4HTMQ9NXG6 502 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ADA2Q9NZK5 511 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 IL17CQ9P0M4 197 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 NLKQ9UBE8 527 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 STRAPQ9Y3F4 350 aaKnown RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 ZNF337Q9Y3M9 751 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SPIN1Q9Y657 262 aaPredicted RBP2.91□□□□□ -1.94
VPS35-208ENST00000568612 URGCP-MRPS24S4R325 110 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 DLEC1Q9Y238 1755 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ALS2Q96Q42 1657 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 FRMPD3Q5JV73 1810 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 ASTN1O14525 1302 aa2.91□□□□□ -1.94
VPS35-208ENST00000568612 SLIT2O94813 1529 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PPIAL4EA0A075B759 164 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 TRAV30A0A087WSZ9 112 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 TGIF2-C20orf24A0A0A6YYL0 155 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PPIAL4CA0A0B4J2A2 164 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 VSTM2BA6NLU5 285 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 C4orf47A7E2U8 309 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 BBIP1A8MTZ0 92 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 C17orf105B2RV13 164 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 MCRIP1C9JLW8 97 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PPIAL4DF5H284 164 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 F8WDY8 70 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 G3V2L1 256 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 TRAPPC2LH3BP13 241 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 J3KTA2 159 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 M0QZ24 198 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 RRHO14718 337 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PHOX2AO14813 284 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 BCKDKO14874 412 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 CASKO14936 926 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 CLIC2O15247 247 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 MFSD11O43934 449 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 GALR3O60755 368 aaPredicted RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 CTSVO60911 334 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 MMP23AO75900 390 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 ZNF432O94892 652 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PLAUP00749 431 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PDYNP01213 254 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 GCGP01275 180 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 IFNA5P01569 189 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 JCHAINP01591 159 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 MBPP02686 304 aaPredicted RBP2.9□□□□□ -1.95
VPS35-208ENST00000568612 CD5P06127 495 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 UMODP07911 640 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 HMBSP08397 361 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 OR10J4P0C629 311 aa2.9□□□□□ -1.95
VPS35-208ENST00000568612 PPIAL4FP0DN26 164 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms