RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ATG5Q9H1Y0 275 aa9.84□□□□□ -0.83
USP3-206ENST00000558157 CYTL1Q9NRR1 136 aa9.84□□□□□ -0.83
USP3-206ENST00000558157 FAM96BQ9Y3D0 163 aa9.84□□□□□ -0.83
USP3-206ENST00000558157 BDP1A6H8Y1 2624 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 A6NLC8 198 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 LAMTOR5O43504 91 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 ZNF432O94892 652 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 CELA2BP08218 269 aaPredicted RBP9.83□□□□□ -0.84
USP3-206ENST00000558157 PAX1P15863 534 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 RAB4AP20338 218 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 CSRP1P21291 193 aaKnown RBP9.83□□□□□ -0.84
USP3-206ENST00000558157 DDTP30046 118 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 FOXO1Q12778 655 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 BIKQ13323 160 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 ATXN7L3Q14CW9 347 aaPredicted RBP9.83□□□□□ -0.84
USP3-206ENST00000558157 AMZ1Q400G9 498 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 STPG1Q5TH74 334 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 TMED4Q7Z7H5 227 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 HMGN2P46Q86SG4 172 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 SLC25A42Q86VD7 318 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 ZNF740Q8NDX6 193 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 FAM174AQ8TBP5 190 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 THRSPQ92748 146 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 CPNE2Q96FN4 548 aaPredicted RBP9.83□□□□□ -0.84
USP3-206ENST00000558157 SPSB2Q99619 263 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 PRSS27Q9BQR3 290 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 NMES1Q9C002 83 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 HRH4Q9H3N8 390 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 PELI2Q9HAT8 420 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 PARP11Q9NR21 331 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 SLC2A8Q9NY64 477 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 C5AR2Q9P296 337 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 KCNE5Q9UJ90 142 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 SERTAD3Q9UJW9 196 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 CBY1Q9Y3M2 126 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 C7orf77A4D0Y5 90 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 CDC40O60508 579 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP3-206ENST00000558157 TBX6O95947 436 aaPredicted RBP9.83□□□□□ -0.84
USP3-206ENST00000558157 AGR2O95994 175 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 AK1P00568 194 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 F10P00742 488 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 IFNA2P01563 188 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 CRHP06850 196 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 RD3LP0DJH9 198 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 MAKP20794 623 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 ZBTB25P24278 435 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 MPZP25189 248 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 CD1CP29017 333 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 SRSF5Q13243 272 aaKnown RBP9.83□□□□□ -0.84
USP3-206ENST00000558157 TSTA3Q13630 321 aaPredicted RBP9.83□□□□□ -0.84
USP3-206ENST00000558157 ERV3-1Q14264 604 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 KRBOX4Q5JUW0 171 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 PRAMEF14Q5SWL7 426 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 WDR5BQ86VZ2 330 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 MAML2Q8IZL2 1156 aaPredicted RBP9.83□□□□□ -0.84
USP3-206ENST00000558157 TMEM105Q8N8V8 129 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 OR1J1Q8NGS3 322 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 ZNF417Q8TAU3 575 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 OR7D2Q96RA2 312 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 BCO1Q9HAY6 547 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 ZNF443Q9Y2A4 671 aaPredicted RBP9.83□□□□□ -0.84
USP3-206ENST00000558157 ADAM18Q9Y3Q7 739 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 THADAQ6YHU6 1953 aa9.83□□□□□ -0.84
USP3-206ENST00000558157 CCDC163A0A0D9SF12 145 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 TMIGD3P0DMS9 266 aaPredicted RBP9.82□□□□□ -0.84
USP3-206ENST00000558157 CLUP10909 449 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 NDUFB7P17568 137 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 MAP3K8P41279 467 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 CX3CR1P49238 355 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 GSK3AP49840 483 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 PRKAG1P54619 331 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 SLC35D3Q5M8T2 416 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 NKAIN2Q5VXU1 208 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 BTNL8Q6UX41 500 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 THSD4Q6ZMP0 1018 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 TMPRSS12Q86WS5 348 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 C2orf73Q8N5S3 287 aaPredicted RBP9.82□□□□□ -0.84
USP3-206ENST00000558157 ZDHHC22Q8N966 263 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 PNLDC1Q8NA58 520 aaKnown RBP9.82□□□□□ -0.84
USP3-206ENST00000558157 RSC1A1Q92681 617 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 SEC22AQ96IW7 307 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 AIF1LQ9BQI0 150 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 DUSP15Q9H1R2 295 aaPredicted RBP9.82□□□□□ -0.84
USP3-206ENST00000558157 SYT4Q9H2B2 425 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 MTHFD2LQ9H903 347 aaPredicted RBP9.82□□□□□ -0.84
USP3-206ENST00000558157 SYNPO2LQ9H987 977 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 DUSP22Q9NRW4 184 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 DUXAA6NLW8 204 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 SEC14L6B5MCN3 397 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 RTCAO00442 366 aaKnown RBP9.82□□□□□ -0.84
USP3-206ENST00000558157 TAAR5O14804 337 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 TMPRSS11DO60235 418 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 THBS1P07996 1170 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 ITGA5P08648 1049 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 SLC6A6P31641 620 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 MEF2DQ14814 521 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 AWAT1Q58HT5 328 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 C1orf210Q8IVY1 113 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 RFLNBQ8N5W9 214 aa9.82□□□□□ -0.84
USP3-206ENST00000558157 OR4E2Q8NGC2 313 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms