RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 LIMS4P0CW20 117 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 SELENOPP49908 381 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 ENTPD1P49961 510 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 NKX6-1P78426 367 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-208ENST00000553868 FMODQ06828 376 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 RAB39AQ14964 217 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 TIGD6Q17RP2 521 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 C10orf128Q5T292 105 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 ADGRE4PQ86SQ3 457 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 LHFPL3Q86UP9 236 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 SATL1Q86VE3 508 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 SLC26A10Q8NG04 563 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 ZNRF4Q8WWF5 429 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 ASB17Q8WXJ9 295 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 NSMAFQ92636 917 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 RND1Q92730 232 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 GMPPAQ96IJ6 420 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-208ENST00000553868 TRIB1Q96RU8 372 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 TBX5Q99593 518 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 ALG8Q9BVK2 526 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 LINC00470Q9BZP3 86 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 ISYNA1Q9NPH2 558 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 TAS2R16Q9NYV7 291 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 CLEC2DQ9UHP7 191 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 LAMP5Q9UJQ1 280 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 FOXD3Q9UJU5 478 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-208ENST00000553868 ING1Q9UK53 422 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-208ENST00000553868 EDARQ9UNE0 448 aa12.73□□□□□ -0.37
SHMT2-208ENST00000553868 CHD3Q12873 2000 aaKnown RBP12.72□□□□□ -0.37
SHMT2-208ENST00000553868 A0A1W2PPL8 197 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 A0A1W2PQL4 384 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-208ENST00000553868 CD8B2A6NJW9 211 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 DHHO43323 396 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 NOL3O60936 208 aaKnown RBP12.72□□□□□ -0.37
SHMT2-208ENST00000553868 INMTO95050 263 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 TFP02787 698 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 MT-ND5P03915 603 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 LCKP06239 509 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 PMPCAQ10713 525 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 STK11Q15831 433 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 ACSF3Q4G176 576 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-208ENST00000553868 TEX30Q5JUR7 227 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 SLC18B1Q6NT16 456 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 PLEKHG7Q6ZR37 379 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 ABHD12BQ7Z5M8 362 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-208ENST00000553868 KCTD20Q7Z5Y7 419 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 TUSC5Q8IXB3 177 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 SYS1Q8N2H4 156 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 OR5M9Q8NGP3 310 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 OR13F1Q8NGS4 319 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 FAM57AQ8TBR7 257 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 HAVCR2Q8TDQ0 301 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 SNX33Q8WV41 574 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 APH1AQ96BI3 265 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 ZNF775Q96BV0 537 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-208ENST00000553868 MGLLQ99685 303 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 TM9SF2Q99805 663 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 CDADC1Q9BWV3 514 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 SLCO5A1Q9H2Y9 848 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 SLC24A3Q9HC58 644 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 CRIM1Q9NZV1 1036 aa12.72□□□□□ -0.37
SHMT2-208ENST00000553868 LSM2Q9Y333 95 aaKnown RBP12.72□□□□□ -0.37
SHMT2-208ENST00000553868 ZNF593O00488 134 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-208ENST00000553868 SS18L1O75177 396 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-208ENST00000553868 ADRA2AP08913 450 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 SPARCP09486 303 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 TACSTD2P09758 323 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 HSMCR30P0CW71 290 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 GAAP10253 952 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 GP2P55259 537 aaKnown RBP12.71□□□□□ -0.37
SHMT2-208ENST00000553868 TAS2R43P59537 309 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 BDH1Q02338 343 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 MLLT11Q13015 90 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-208ENST00000553868 MRPL28Q13084 256 aaKnown RBP12.71□□□□□ -0.37
SHMT2-208ENST00000553868 ETFDHQ16134 617 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 KCNMB1Q16558 191 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 ARMCX4Q5H9R4 360 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 NSUN5P2Q63ZY6 315 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 ZNF585AQ6P3V2 769 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 LRFN4Q6PJG9 635 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 ZNF322Q6U7Q0 402 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-208ENST00000553868 FAM220AQ7Z4H9 259 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 WDFY1Q8IWB7 410 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 ZNF100Q8IYN0 542 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 OTOSQ8NHW6 89 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 TTYH2Q9BSA4 534 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 SEC61A2Q9H9S3 476 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 POLR1DQ9Y2S0 133 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 EMC9Q9Y3B6 208 aa12.71□□□□□ -0.37
SHMT2-208ENST00000553868 PHF3Q92576 2039 aaKnown RBP12.71□□□□□ -0.38
SHMT2-208ENST00000553868 KIAA1549Q9HCM3 1950 aa12.7□□□□□ -0.38
SHMT2-208ENST00000553868 DNAJC13O75165 2243 aa12.7□□□□□ -0.38
SHMT2-208ENST00000553868 MED12Q93074 2177 aa12.7□□□□□ -0.38
SHMT2-208ENST00000553868 IGKV1D-43A0A0B4J1Z2 117 aa12.7□□□□□ -0.38
SHMT2-208ENST00000553868 CCDC160A6NGH7 325 aa12.7□□□□□ -0.38
SHMT2-208ENST00000553868 A6NNC1 897 aa12.7□□□□□ -0.38
SHMT2-208ENST00000553868 HSPB2A8KAH6 182 aa12.7□□□□□ -0.38
SHMT2-208ENST00000553868 TGM6O95932 706 aa12.7□□□□□ -0.38
SHMT2-208ENST00000553868 SCG5P05408 212 aa12.7□□□□□ -0.38
SHMT2-208ENST00000553868 KRT8P05787 483 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms