RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 MMP15P51511 669 aa13.9□□□□□ -0.18
VPS29-207ENST00000549970 ARHGDIAP52565 204 aa13.9□□□□□ -0.18
VPS29-207ENST00000549970 SCRN3Q0VDG4 424 aa13.9□□□□□ -0.18
VPS29-207ENST00000549970 KRT72Q14CN4 511 aa13.9□□□□□ -0.18
VPS29-207ENST00000549970 TMEM186Q96B77 213 aa13.9□□□□□ -0.18
VPS29-207ENST00000549970 C7orf34Q96L11 122 aa13.9□□□□□ -0.18
VPS29-207ENST00000549970 KRCC1Q9NPI7 259 aaPredicted RBP13.9□□□□□ -0.18
VPS29-207ENST00000549970 HIF1ANQ9NWT6 349 aa13.9□□□□□ -0.18
VPS29-207ENST00000549970 IER3IP1Q9Y5U9 82 aa13.9□□□□□ -0.18
VPS29-207ENST00000549970 ZSCAN5BA6NJL1 495 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 CLDN25C9JDP6 229 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 SOCS2O14508 198 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 SLC16A7O60669 478 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 ICMTO60725 284 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 MSMBP08118 114 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 HTR5AP47898 357 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 FXYD6P3P58550 94 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 LMO4P61968 165 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 HFEQ30201 348 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 FAM209AQ5JX71 171 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 GPR139Q6DWJ6 353 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 ARL9Q6T311 187 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 C1orf174Q8IYL3 243 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 ELMOD3Q96FG2 381 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 GPX7Q96SL4 187 aaPredicted RBP13.89□□□□□ -0.19
VPS29-207ENST00000549970 NRIP3Q9NQ35 241 aa13.89□□□□□ -0.19
VPS29-207ENST00000549970 COA3Q9Y2R0 106 aaPredicted RBP13.89□□□□□ -0.19
VPS29-207ENST00000549970 ANK2Q01484 3957 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 UNC119BA6NIH7 251 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 H3BSA7 217 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 SGCEO43556 437 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 TIMM8AO60220 97 aaPredicted RBP13.88□□□□□ -0.19
VPS29-207ENST00000549970 KHDRBS3O75525 346 aaKnown RBP13.88□□□□□ -0.19
VPS29-207ENST00000549970 MPZL1O95297 269 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 COX5BP10606 129 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 ITGA2P17301 1181 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 MSX2P35548 267 aaPredicted RBP13.88□□□□□ -0.19
VPS29-207ENST00000549970 SPIBQ01892 262 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 PTCHD4Q6ZW05 846 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 VASH1Q7L8A9 365 aaPredicted RBP13.88□□□□□ -0.19
VPS29-207ENST00000549970 OR51F2Q8NH61 342 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 FANK1Q8TC84 345 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 SLC7A6Q92536 515 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 PYURFQ96I23 114 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 DHRS1Q96LJ7 313 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 LRRC37BQ96QE4 947 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 GPA33Q99795 319 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 WACQ9BTA9 647 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 POFUT1Q9H488 388 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 ZNF665Q9H7R5 613 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 GORASP2Q9H8Y8 452 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 MSL2Q9HCI7 577 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 CYSLTR2Q9NS75 346 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 PLEK2Q9NYT0 353 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 VSX1Q9NZR4 365 aaPredicted RBP13.88□□□□□ -0.19
VPS29-207ENST00000549970 MAGEL2Q9UJ55 1249 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 GRIP1Q9Y3R0 1128 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 WIPI2Q9Y4P8 454 aa13.88□□□□□ -0.19
VPS29-207ENST00000549970 PPP1R3DO95685 299 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 HSD17B1P14061 328 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 LIPAP38571 399 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 CENPAP49450 140 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 RPS6KA3P51812 740 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 GYS2P54840 703 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 AQP6Q13520 282 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 C1orf94Q6P1W5 598 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 SMARCD3Q6STE5 483 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 DPY19L2P2Q6ZN68 376 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 ADCK1Q86TW2 530 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 GLB1L2Q8IW92 636 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 PGAM4Q8N0Y7 254 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 CCL17Q92583 94 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 TIMD4Q96H15 378 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 NSMCE2Q96MF7 247 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 FUZQ9BT04 418 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 C19orf24Q9BVV8 132 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 EGLN1Q9GZT9 426 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 NUAK2Q9H093 628 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 ASH2LQ9UBL3 628 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 CGGBP1Q9UFW8 167 aaPredicted RBP13.87□□□□□ -0.19
VPS29-207ENST00000549970 POLR1DQ9Y2S0 133 aa13.87□□□□□ -0.19
VPS29-207ENST00000549970 GADD45GO95257 159 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 GPANK1O95872 356 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 SEMG1P04279 462 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 GSTM3P21266 225 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 CDKN2AP42771 156 aaKnown RBP13.86□□□□□ -0.19
VPS29-207ENST00000549970 GNGT1P63211 74 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 PSG7Q13046 419 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 SPRNQ5BIV9 151 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 ZMAT1Q5H9K5 638 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 MTX3Q5HYI7 312 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 SAMD4BQ5PRF9 694 aaKnown RBP13.86□□□□□ -0.19
VPS29-207ENST00000549970 LIPNQ5VXI9 398 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 ZNF771Q7L3S4 317 aaPredicted RBP13.86□□□□□ -0.19
VPS29-207ENST00000549970 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.86□□□□□ -0.19
VPS29-207ENST00000549970 NPEPL1Q8NDH3 523 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 RAB1CQ92928 201 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 MCUR1Q96AQ8 359 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 RAB39BQ96DA2 213 aa13.86□□□□□ -0.19
VPS29-207ENST00000549970 TSSK2Q96PF2 358 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms