RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 OR52W1Q6IF63 320 aa11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 TMEM71Q6P5X7 295 aa11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 HAGHLQ6PII5 290 aaPredicted RBP11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 ZNF440Q8IYI8 595 aa11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 PM20D2Q8IYS1 436 aa11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 C12orf45Q8N5I9 185 aaPredicted RBP11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 GVQW1Q8N7I0 195 aa11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 NUDT9Q9BW91 350 aa11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 ESRP2Q9H6T0 727 aaKnown RBP11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 GRHPRQ9UBQ7 328 aa11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 MTFP1Q9UDX5 166 aa11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 PCDHB10Q9UN67 800 aa11.3□□□□□ -0.6
SFSWAP-208ENST00000539506 IGKV3D-11A0A0A0MRZ8 115 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 A0A1W2PR77 199 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 SNRPGP15A8MWD9 76 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 H0YIG0 161 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 H7C2Y5 167 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 ZNF254O75437 659 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 RAB3DO95716 219 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 MNDAP41218 407 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 EPHA4P54764 986 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 DHODHQ02127 395 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 CFHR1Q03591 330 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 EIF2B1Q14232 305 aaKnown RBP11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 CHRDL2Q6WN34 429 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 TMPPEQ6ZT21 453 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 C9orf40Q8IXQ3 194 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 KDM8Q8N371 416 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 ACBD4Q8NC06 268 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 ROBO4Q8WZ75 1007 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 GAL3ST4Q96RP7 486 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 PDE7BQ9NP56 450 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 FAM96BQ9Y3D0 163 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 TRBV5-5A0A0J9YX44 114 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 CPED1A4D0V7 1026 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 TMEM235A6NFC5 223 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 OR4C45A6NMZ5 311 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 MTRF1O75570 445 aaKnown RBP11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 ALOX5APP20292 161 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 SPOCK1Q08629 439 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 TDGQ13569 410 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 SMAD2Q15796 467 aaKnown RBP11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 VWA2Q5GFL6 755 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 HSD17B13Q7Z5P4 300 aaPredicted RBP11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 C17orf82Q86X59 251 aaPredicted RBP11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 LDLRAD3Q86YD5 345 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 OR51A2Q8NGJ7 313 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 ZNF563Q8TA94 476 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 ADAMTS18Q8TE60 1221 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 PPP1R1CQ8WVI7 109 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 PHYHIPQ92561 330 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 CCDC74AQ96AQ1 378 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 SLC25A36Q96CQ1 311 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 MESP1Q9BRJ9 268 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 SLC22A11Q9NSA0 550 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 RP1P56715 2156 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 TMEM82A0PJX8 343 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 ZNF705EA8MWA4 302 aaPredicted RBP11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 OR2T1O43869 369 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 LMX1BO60663 402 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 HLA-AP01891 365 aaKnown RBP11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 IL5P05113 134 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 AKR1C4P17516 323 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 GALNSP34059 522 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 ELOCQ15369 112 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 ZNF227Q86WZ6 799 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 PRSS58Q8IYP2 241 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 CMTM3Q96MX0 182 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 CMKLR1Q99788 373 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 OR2S2Q9NQN1 319 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 CUTCQ9NTM9 273 aa11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 ATXN7L1Q9ULK2 861 aaPredicted RBP11.29□□□□□ -0.6
SFSWAP-208ENST00000539506 KANTRA0A1W2PQU2 76 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 TLCD2A6NGC4 264 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 LILRA5A6NI73 299 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 OR6C65A6NJZ3 312 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 SULT1C2O00338 296 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 XRCC3O43542 346 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 HCRTR2O43614 444 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 FARS2O95363 451 aaKnown RBP11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 WNT11O96014 354 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 DCNP07585 359 aaKnown RBP11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 RAB40ALP0C0E4 278 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 AKAIN1P0CW23 69 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 MYF5P13349 255 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 FAUP35544 74 aaKnown RBP11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 DLSTP36957 453 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 KIR3DL2P43630 455 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 ASPHD2Q6ICH7 369 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 ETV3LQ6ZN32 361 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 GABRG1Q8N1C3 465 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 JAGN1Q8N5M9 183 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 OR2G2Q8NGZ5 317 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 RAB40AQ8WXH6 277 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 FAM3DQ96BQ1 224 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 SLC46A1Q96NT5 459 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 A0A0B4J2A0 478 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 FRG2CA6NGY1 282 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 OR2AT4A6NND4 320 aa11.28□□□□□ -0.6
SFSWAP-208ENST00000539506 HMSDA8MTL9 139 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 299.7 ms