RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 APH1BQ8WW43 257 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 CCDC124Q96CT7 223 aaKnown RBP3.5□□□□□ -1.85
VPS13A-212ENST00000493341 TRNT1Q96Q11 434 aaKnown RBP3.5□□□□□ -1.85
VPS13A-212ENST00000493341 P2RX4Q99571 388 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 LLPHQ9BRT6 129 aaKnown RBP3.5□□□□□ -1.85
VPS13A-212ENST00000493341 UTP23Q9BRU9 249 aaKnown RBP3.5□□□□□ -1.85
VPS13A-212ENST00000493341 FRMD8P1Q9BZ68 369 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-212ENST00000493341 GOLPH3Q9H4A6 298 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 ARMC7Q9H6L4 198 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 ZDHHC11Q9H8X9 412 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 PLGRKTQ9HBL7 147 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 ZNF275Q9NSD4 429 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-212ENST00000493341 MARCH5Q9NX47 278 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 CLCF1Q9UBD9 225 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 ZNF282Q9UDV7 671 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-212ENST00000493341 SHPKQ9UHJ6 478 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 V9GYY9 64 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 PRG4Q92954 1404 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-212ENST00000493341 PCNX3Q9H6A9 2034 aa3.5□□□□□ -1.85
VPS13A-212ENST00000493341 A0A1B0GVI7 797 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 K7EMT4 169 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 NME4O00746 187 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 ZNF354AO60765 605 aaPredicted RBP3.49□□□□□ -1.85
VPS13A-212ENST00000493341 PLEKHA8P1O95397 391 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 CATP04040 527 aaKnown RBP3.49□□□□□ -1.85
VPS13A-212ENST00000493341 CSF3P09919 207 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 HTR2BP41595 481 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 UCNP55089 124 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 RPS21P63220 83 aaKnown RBP3.49□□□□□ -1.85
VPS13A-212ENST00000493341 TRDNQ13061 729 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 NRF1Q16656 503 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 ZBED5Q49AG3 693 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 METTL7BQ6UX53 244 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 TMPRSS11AQ6ZMR5 421 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 TMEM179BQ7Z7N9 219 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 TMEM61Q8N0U2 210 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 MREGQ8N565 214 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 DUSP18Q8NEJ0 188 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 ANGPTL6Q8NI99 470 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 FAM151AQ8WW52 585 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 GEMIN6Q8WXD5 167 aaKnown RBP3.49□□□□□ -1.85
VPS13A-212ENST00000493341 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.49□□□□□ -1.85
VPS13A-212ENST00000493341 IL22RA2Q969J5 263 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 CENPNQ96H22 339 aaPredicted RBP3.49□□□□□ -1.85
VPS13A-212ENST00000493341 ZNF702PQ9H963 129 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 VCX3AQ9NNX9 186 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 SH2D2AQ9NP31 389 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 STX18Q9P2W9 335 aaKnown RBP3.49□□□□□ -1.85
VPS13A-212ENST00000493341 VSIG4Q9Y279 399 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 UHRF1BP1LA0JNW5 1464 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 RAPGEF2Q9Y4G8 1499 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 PRXQ9BXM0 1461 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 A0A0J9YXY3 114 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 FAM166BA8MTA8 275 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 SC5DO75845 299 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 SRP72O76094 671 aaKnown RBP3.49□□□□□ -1.85
VPS13A-212ENST00000493341 UTS2O95399 124 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 OXTP01178 125 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 HPGDP15428 266 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 NQO2P16083 231 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 TCP1P17987 556 aaKnown RBP3.49□□□□□ -1.85
VPS13A-212ENST00000493341 IL12BP29460 328 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 RND2P52198 227 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 MAP3K7CLP57077 242 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 PRPS1P60891 318 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 TPM4P67936 248 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 ZNF45Q02386 682 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 LRRC63Q05C16 580 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 REG3AQ06141 175 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 SLC39A6Q13433 755 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 SLC1A5Q15758 541 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 UTF1Q5T230 341 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 MRPL55Q7Z7F7 128 aaKnown RBP3.49□□□□□ -1.85
VPS13A-212ENST00000493341 PNKDQ8N490 385 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 OR51E1Q8TCB6 317 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 MARC2Q969Z3 335 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 RPEQ96AT9 228 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 NICN1Q9BSH3 213 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 ABCB10Q9NRK6 738 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 POFUT2Q9Y2G5 429 aa3.49□□□□□ -1.85
VPS13A-212ENST00000493341 DISP1Q96F81 1524 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 KIAA0556O60303 1618 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 MGAT4DA6NG13 374 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 TRPC5OSA6NMA1 111 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 H0YHG0 523 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 VAPBO95292 243 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 TIMP1P01033 207 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 GIPP09681 153 aaPredicted RBP3.48□□□□□ -1.85
VPS13A-212ENST00000493341 RAB4AP20338 218 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 KIAA0087Q14695 138 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 ATP6V1FQ16864 119 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 Q1RN00 199 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 ANKRD22Q5VYY1 191 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 RFLNAQ6ZTI6 216 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 TMEM179Q6ZVK1 233 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 PEX26Q7Z412 305 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 CBLN2Q8IUK8 224 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 CD302Q8IX05 232 aa3.48□□□□□ -1.85
VPS13A-212ENST00000493341 SELENOHQ8IZQ5 122 aaKnown RBP3.48□□□□□ -1.85
VPS13A-212ENST00000493341 SYS1Q8N2H4 156 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms