RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.42□□□□□ -1.54
PRPF40A-210ENST00000489741 V9GYY5 206 aaPredicted RBP5.42□□□□□ -1.54
PRPF40A-210ENST00000489741 A0A087WWL8 130 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 TMEM89A2RUT3 159 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 PRORSD1PA6NEY8 169 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 DNAJC9-AS1A6NH13 148 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 CGB1A6NKQ9 187 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 LRRN3E7EW58 273 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 M0R233 179 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 FMO6PO60774 539 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 MFN2O95140 757 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 MT-ATP6P00846 226 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 TFP02787 698 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 PATE4P0C8F1 98 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 B4GALT1P15291 398 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF250P15622 560 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 TCN1P20061 433 aaPredicted RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 PCMT1P22061 227 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 GTF2E2P29084 291 aaKnown RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 SRP14P37108 136 aaKnown RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 ALDH3B1P43353 468 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 GPR6P46095 362 aaPredicted RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 CDH12P55289 794 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 RPS23P62266 143 aaKnown RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 PMS2P3Q13401 168 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 CAMK2DQ13557 499 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 CCNIQ14094 377 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 NPTX1Q15818 432 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 HIST3H3Q16695 136 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 DUSP7Q16829 419 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 TRMT5Q32P41 509 aaKnown RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 GCNT6Q5T4J0 391 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 CARD17Q5XLA6 110 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF613Q6PF04 617 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 USP43Q70EL4 1123 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 OVCH2Q7RTZ1 564 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 GLCCI1Q86VQ1 547 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 SNX32Q86XE0 403 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 KRT73Q86Y46 540 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 PTOV1Q86YD1 416 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 PAQR4Q8N4S7 273 aaPredicted RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 OR5J2Q8NH18 312 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 TMEM186Q96B77 213 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 ZBTB9Q96C00 473 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 TRIM44Q96DX7 344 aaPredicted RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 SEPHS2Q99611 448 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 ARHGDIGQ99819 225 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF426Q9BUY5 554 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 ULBP2Q9BZM5 246 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 MS4A7Q9GZW8 240 aaPredicted RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 CENPHQ9H3R5 247 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF385DQ9H6B1 395 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 CACYBPQ9HB71 228 aaKnown RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 TMEM27Q9HBJ8 222 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 B3GAT2Q9NPZ5 323 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 TCF7L2Q9NQB0 619 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 G6PC2Q9NQR9 355 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF275Q9NSD4 429 aaPredicted RBP5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 NKIRAS2Q9NYR9 191 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 GLTPQ9NZD2 209 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 FBXL3Q9UKT7 428 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 POFUT2Q9Y2G5 429 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 USH1CQ9Y6N9 552 aa5.41□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF726A6NNF4 738 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 C17orf100A8MU93 164 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 C5orf58C9J3I9 102 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 DHHO43323 396 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF500O60304 480 aaPredicted RBP5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 TUSC2O75896 110 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 UBL3O95164 117 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 CLPTM1O96005 669 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 MSMBP08118 114 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 ASAH2BP0C7U1 165 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 PGA4P0DJD7 388 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 PGA3P0DJD8 388 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 ADORA3P0DMS8 318 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 OR8G3PP0DMU2 310 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 SAGP10523 405 aaPredicted RBP5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 NQO1P15559 274 aaKnown RBP5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 EGR1P18146 543 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 PPIBP23284 216 aaKnown RBP5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 CRYBB2P43320 205 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 CAPZA2P47755 286 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 PTDSS1P48651 473 aaKnown RBP5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 CSNK1A1P48729 337 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 ATP4BP51164 291 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF133P52736 654 aaPredicted RBP5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 ARFIP2P53365 341 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 BIDP55957 195 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 MAGOHP61326 146 aaKnown RBP5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 MYBPC1Q00872 1141 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 RUNX1T1Q06455 604 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 RAB32Q13637 225 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 SCARB2Q14108 478 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 MAD2L1BPQ15013 274 aaPredicted RBP5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 ZNF74Q16587 644 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 MMEL1Q495T6 779 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 PLA1AQ53H76 456 aa5.4□□□□□ -1.54
PRPF40A-210ENST00000489741 RUNDC3AQ59EK9 446 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms