RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 THEM4Q5T1C6 240 aa14.89□□□□□ -0.03
VIM-205ENST00000485947 RNLSQ5VYX0 342 aa14.89□□□□□ -0.03
VIM-205ENST00000485947 ZIC4Q8N9L1 334 aa14.89□□□□□ -0.03
VIM-205ENST00000485947 PROKR2Q8NFJ6 384 aa14.89□□□□□ -0.03
VIM-205ENST00000485947 ZNF775Q96BV0 537 aaPredicted RBP14.89□□□□□ -0.03
VIM-205ENST00000485947 ZNF385AQ96PM9 386 aaKnown RBP14.89□□□□□ -0.03
VIM-205ENST00000485947 EMC6Q9BV81 110 aa14.89□□□□□ -0.03
VIM-205ENST00000485947 JAM3Q9BX67 310 aa14.89□□□□□ -0.03
VIM-205ENST00000485947 CDCA4Q9BXL8 241 aa14.89□□□□□ -0.03
VIM-205ENST00000485947 CCDC90BQ9GZT6 254 aa14.89□□□□□ -0.03
VIM-205ENST00000485947 NUAK2Q9H093 628 aa14.89□□□□□ -0.03
VIM-205ENST00000485947 ZNF701Q9NV72 531 aaPredicted RBP14.89□□□□□ -0.03
VIM-205ENST00000485947 FREM1Q5H8C1 2179 aa14.89□□□□□ -0.03
VIM-205ENST00000485947 MAP1AP78559 2803 aaPredicted RBP14.88□□□□□ -0.03
VIM-205ENST00000485947 CIB4A0PJX0 185 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 SLC16A7O60669 478 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 KHDRBS3O75525 346 aaKnown RBP14.88□□□□□ -0.03
VIM-205ENST00000485947 ZNF432O94892 652 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 MT-ND2P03891 347 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 GYPBP06028 91 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 ATP6V1B1P15313 513 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 ATP6V1E1P36543 226 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 CAMK2DQ13557 499 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 TSC22D1Q15714 1073 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 HIST3H3Q16695 136 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 LINC01590Q5TEZ4 76 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 SEZ6L2Q6UXD5 910 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 BIVMQ86UB2 503 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 KRTAP1-3Q8IUG1 177 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 SPARTQ8N0X7 666 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 TMEM123Q8N131 208 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 OR6V1Q8N148 313 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 WFDC11Q8NEX6 87 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 OR52I1Q8NGK6 324 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 SGCDQ92629 289 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 AKAP1Q92667 903 aaKnown RBP eCLIP14.88□□□□□ -0.03
VIM-205ENST00000485947 TMEM54Q969K7 222 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 FBXW5Q969U6 566 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 C18orf12Q96KH6 178 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 OR2M2Q96R28 347 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 SRA1Q9HD15 236 aaKnown RBP14.88□□□□□ -0.03
VIM-205ENST00000485947 UPB1Q9UBR1 384 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 B9D1Q9UPM9 204 aa14.88□□□□□ -0.03
VIM-205ENST00000485947 EXOSC1Q9Y3B2 195 aaKnown RBP14.88□□□□□ -0.03
VIM-205ENST00000485947 ROS1P08922 2347 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 IGLV1-36A0A0B4J1U3 117 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 SLC43A1O75387 559 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 IGHA1P01876 353 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 SBK2P0C263 348 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 EDNRAP25101 427 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 PTAFRP25105 342 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 PYCR1P32322 319 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 NTF4P34130 210 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 CSNK1A1P48729 337 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 ZNF133P52736 654 aaPredicted RBP14.87□□□□□ -0.03
VIM-205ENST00000485947 IRF3Q14653 427 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 TBCEQ15813 527 aaPredicted RBP14.87□□□□□ -0.03
VIM-205ENST00000485947 STK11Q15831 433 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 ETFDHQ16134 617 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 Q5PR19 223 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 TMEM108Q6UXF1 575 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 AAED1Q7RTV5 226 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 SYT14Q8NB59 555 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 OR51G2Q8NGK0 314 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 OR6K6Q8NGW6 343 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 NMD3Q96D46 503 aaKnown RBP14.87□□□□□ -0.03
VIM-205ENST00000485947 TSSK2Q96PF2 358 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 CNN2Q99439 309 aaKnown RBP14.87□□□□□ -0.03
VIM-205ENST00000485947 MARCH7Q9H992 704 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 MOV10Q9HCE1 1003 aaKnown RBP14.87□□□□□ -0.03
VIM-205ENST00000485947 OBP2BQ9NPH6 170 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 INPP5EQ9NRR6 644 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 FAIMQ9NVQ4 179 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 GLTPQ9NZD2 209 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 COMMD3-BMI1R4GMX3 469 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 RAI1Q7Z5J4 1906 aaPredicted RBP14.87□□□□□ -0.03
VIM-205ENST00000485947 ARID1AO14497 2285 aa14.87□□□□□ -0.03
VIM-205ENST00000485947 DCTN6O00399 190 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 CTLA4P16410 223 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 MYL12AP19105 171 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 MPGP29372 298 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 RPL5P46777 297 aaKnown RBP14.86□□□□□ -0.03
VIM-205ENST00000485947 ACTC1P68032 377 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 ACTA1P68133 377 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 GLO1Q04760 184 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 PIGFQ07326 219 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 BSPH1Q075Z2 132 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 FAPQ12884 760 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 GABRA6Q16445 453 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 ZNF672Q499Z4 452 aaPredicted RBP14.86□□□□□ -0.03
VIM-205ENST00000485947 KCTD8Q6ZWB6 473 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 WDFY1Q8IWB7 410 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 C20orf196Q8IYI0 205 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 OR6N1Q8NGY5 312 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 FCGR1BQ92637 280 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 ZMYND19Q96E35 227 aaPredicted RBP14.86□□□□□ -0.03
VIM-205ENST00000485947 MYCBPQ99417 103 aaPredicted RBP14.86□□□□□ -0.03
VIM-205ENST00000485947 MNTQ99583 582 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 SLCO5A1Q9H2Y9 848 aa14.86□□□□□ -0.03
VIM-205ENST00000485947 ADGRL4Q9HBW9 690 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms