RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 LCN6P62502 163 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 SRSF3P84103 164 aaKnown RBP11.98□□□□□ -0.49
USP40-214ENST00000483519 CST6Q15828 149 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 NKPD1Q17RQ9 610 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 GAB4Q2WGN9 574 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 GLYATL3Q5SZD4 288 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 PHF19Q5T6S3 580 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 FIGLAQ6QHK4 219 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 OR4A4PQ8NGN8 299 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 MOGAT1Q96PD6 335 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 CDC6Q99741 560 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 ZFYVE21Q9BQ24 234 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 CRB3Q9BUF7 120 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 Q9N2J8 555 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 CSAG2Q9Y5P2 127 aa11.98□□□□□ -0.49
USP40-214ENST00000483519 EEF1E1-BLOC1S5C9J1V9 151 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 SGCEO43556 437 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 CRHP06850 196 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 FOLR2P14207 255 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 POLR2GP62487 172 aaKnown RBP eCLIP11.97□□□□□ -0.49
USP40-214ENST00000483519 GABREP78334 506 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 CCINQ13939 588 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 PEA15Q15121 130 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 OR7A5Q15622 319 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 CDNFQ49AH0 187 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 MESTQ5EB52 335 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 EEF1A1P5Q5VTE0 462 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 DRAM2Q6UX65 266 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 CA13Q8N1Q1 262 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 OR6S1Q8NH40 331 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 MAFAQ8NHW3 353 aaPredicted RBP11.97□□□□□ -0.49
USP40-214ENST00000483519 OTOSQ8NHW6 89 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 FLVCR1-AS1Q8TAF5 88 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 ASB17Q8WXJ9 295 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 RSC1A1Q92681 617 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 ANKRD9Q96BM1 317 aaPredicted RBP11.97□□□□□ -0.49
USP40-214ENST00000483519 OR8B4Q96RC9 309 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 ELOVL3Q9HB03 270 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 TBC1D29Q9UFV1 150 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 RANBP2P49792 3224 aaKnown RBP11.97□□□□□ -0.49
USP40-214ENST00000483519 C5orf51A6NDU8 294 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 OTOL1A6NHN0 477 aaPredicted RBP11.97□□□□□ -0.49
USP40-214ENST00000483519 NUDT21O43809 227 aaKnown RBP11.97□□□□□ -0.49
USP40-214ENST00000483519 GLAP06280 429 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 ACAA1P09110 424 aaPredicted RBP11.97□□□□□ -0.49
USP40-214ENST00000483519 AVPR2P30518 371 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 ARRB1P49407 418 aaPredicted RBP11.97□□□□□ -0.49
USP40-214ENST00000483519 CYCSP99999 105 aaKnown RBP11.97□□□□□ -0.49
USP40-214ENST00000483519 WBP2NLQ6ICG8 309 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 LRRC69Q6ZNQ3 347 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 DGAT2L6Q6ZPD8 337 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 CD163Q86VB7 1156 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 ELP5Q8TE02 316 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 TMED6Q8WW62 240 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 TCEAL3Q969E4 200 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 OR2M4Q96R27 311 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 ZNF251Q9BRH9 671 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 TMEM231Q9H6L2 316 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 MMP25Q9NPA2 562 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 KCNG2Q9UJ96 466 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 DOCK9Q9BZ29 2069 aa11.97□□□□□ -0.49
USP40-214ENST00000483519 OR2W5A6NFC9 320 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 ZNF705EA8MWA4 302 aaPredicted RBP11.96□□□□□ -0.49
USP40-214ENST00000483519 H0YGG7 62 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 FABP1P07148 127 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 FSTP19883 344 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 VIPR2P41587 438 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 PGDP52209 483 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 ADPRHP54922 357 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 ARF3P61204 181 aaPredicted RBP11.96□□□□□ -0.49
USP40-214ENST00000483519 RPS21P63220 83 aaKnown RBP11.96□□□□□ -0.49
USP40-214ENST00000483519 SLC17A1Q14916 467 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 MEP1BQ16820 701 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 HYAL4Q2M3T9 481 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 RHOUQ7L0Q8 258 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 KCTD9Q7L273 389 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 TAF8Q7Z7C8 310 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 SHISA5Q8N114 240 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 ZSCAN1Q8NBB4 408 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 NANPQ8TBE9 248 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 CASTOR1Q8WTX7 329 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 HLA-CQ95604 372 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 VSTM2LQ96N03 204 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 TSPAN32Q96QS1 320 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 KXD1Q9BQD3 176 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 NRIP2Q9BQI9 281 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 SELENOIQ9C0D9 397 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 RNF122Q9H9V4 155 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 ZMAT3Q9HA38 289 aaKnown RBP11.96□□□□□ -0.49
USP40-214ENST00000483519 RCC2Q9P258 522 aaKnown RBP11.96□□□□□ -0.49
USP40-214ENST00000483519 THAP10Q9P2Z0 257 aaPredicted RBP11.96□□□□□ -0.49
USP40-214ENST00000483519 SERGEFQ9UGK8 458 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 LOC100509620A0A075B734 347 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 TRBV6-7A0A0A0MS04 114 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 A0A0B4J2A0 478 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 A0A1W2PP55 124 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 MEGF11A6BM72 1044 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 TMEM235A6NFC5 223 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 STK17BO94768 372 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 FARS2O95363 451 aaKnown RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms