RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ZNF264O43296 627 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 RAG2P55895 527 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 TAS2R31P59538 309 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 RIPPLY1Q0D2K3 151 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 PPP1R1AQ13522 171 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 SSX2Q16385 188 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 PHLDA2Q53GA4 152 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 HIST2H3PS2Q5TEC6 136 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 CLEC9AQ6UXN8 241 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 OR4C3Q8NH37 302 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 PHYHIPQ92561 330 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 TMEM59Q9BXS4 323 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 OR11A1Q9GZK7 315 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 UBQLN4Q9NRR5 601 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 GFOD1Q9NXC2 390 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 FAM230AA0A1W2PPH8 454 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 PRSS38A1L453 326 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 BCL2L11O43521 198 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 DIRAS3O95661 229 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 HNRNPA1P09651 372 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP42-206ENST00000479544 DHPSP49366 369 aaPredicted RBP12.28□□□□□ -0.44
USP42-206ENST00000479544 ASCL1P50553 236 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 HTRA4P83105 476 aaPredicted RBP12.28□□□□□ -0.44
USP42-206ENST00000479544 ACTBL2Q562R1 376 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 RNLSQ5VYX0 342 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 ADGRE4PQ86SQ3 457 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 OR51A4Q8NGJ6 313 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 SERINC1Q9NRX5 453 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 ESPL1Q14674 2120 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 OR6C76A6NM76 312 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 XRCC2O43543 280 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 ADH1BP00325 375 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 IGHA1P01876 353 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 ARG1P05089 322 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 ITGB2P05107 769 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 IL5P05113 134 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 LIMS1P48059 325 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 RPL18Q07020 188 aaKnown RBP12.28□□□□□ -0.44
USP42-206ENST00000479544 MDGA2Q7Z553 956 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 HSD17B13Q7Z5P4 300 aaPredicted RBP12.28□□□□□ -0.44
USP42-206ENST00000479544 NR2C2APQ86WQ0 139 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 RCBTB1Q8NDN9 531 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 OR14A16Q8NHC5 309 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 DCBLD2Q96PD2 775 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 KCNJ15Q99712 375 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 DUSP22Q9NRW4 184 aa12.28□□□□□ -0.44
USP42-206ENST00000479544 LOC107986453A0A1B0GWG9 222 aa12.27□□□□□ -0.44
USP42-206ENST00000479544 TUBAL3A6NHL2 446 aa12.27□□□□□ -0.44
USP42-206ENST00000479544 CD53P19397 219 aa12.27□□□□□ -0.44
USP42-206ENST00000479544 PXNP49023 591 aaPredicted RBP12.27□□□□□ -0.44
USP42-206ENST00000479544 MECP2P51608 486 aaKnown RBP12.27□□□□□ -0.44
USP42-206ENST00000479544 EFNB2P52799 333 aa12.27□□□□□ -0.44
USP42-206ENST00000479544 NCMAPQ5T1S8 102 aa12.27□□□□□ -0.44
USP42-206ENST00000479544 SLC30A7Q8NEW0 376 aa12.27□□□□□ -0.44
USP42-206ENST00000479544 GLYATL2Q8WU03 294 aa12.27□□□□□ -0.44
USP42-206ENST00000479544 FAM3CQ92520 227 aa12.27□□□□□ -0.44
USP42-206ENST00000479544 FAM212BQ9NTI7 297 aaPredicted RBP12.27□□□□□ -0.44
USP42-206ENST00000479544 ANKRD20A5PA0PJZ0 165 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 TMEM218A2RU14 115 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 ADAP1O75689 374 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 CNOT4O95628 575 aaKnown RBP12.27□□□□□ -0.45
USP42-206ENST00000479544 VSIG10L2P0DP72 767 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 ZNF93P35789 620 aaPredicted RBP12.27□□□□□ -0.45
USP42-206ENST00000479544 BTG2P78543 158 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 PGAP1Q75T13 922 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 ZAR1Q86SH2 424 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 MCATQ8IVS2 390 aaKnown RBP12.27□□□□□ -0.45
USP42-206ENST00000479544 GALNT16Q8N428 558 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 SFT2D1Q8WV19 159 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 FRZBQ92765 325 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 PNPLA2Q96AD5 504 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 RBM24Q9BX46 236 aaKnown RBP12.27□□□□□ -0.45
USP42-206ENST00000479544 ZMAT5Q9UDW3 170 aaKnown RBP12.27□□□□□ -0.45
USP42-206ENST00000479544 DSPPQ9NZW4 1301 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 TRAV8-7A0A075B6U6 113 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 TMEM265A0A087WTH1 108 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 TSTD3H0UI37 97 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 C5AR1P21730 350 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 NR0B2Q15466 257 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 FAM109BQ6ICB4 259 aaPredicted RBP12.27□□□□□ -0.45
USP42-206ENST00000479544 FAM57BQ71RH2 274 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 SEMA6DQ8NFY4 1073 aa12.27□□□□□ -0.45
USP42-206ENST00000479544 HOXB13Q92826 284 aaPredicted RBP12.27□□□□□ -0.45
USP42-206ENST00000479544 ZNF707Q96C28 371 aaPredicted RBP12.27□□□□□ -0.45
USP42-206ENST00000479544 TRBV23-1A0A0A0MS06 115 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 UMAD1C9J7I0 102 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 ALOX12BO75342 701 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 THBS1P07996 1170 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 CRABP1P29762 137 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 TAGLN2P37802 199 aaKnown RBP12.26□□□□□ -0.45
USP42-206ENST00000479544 ELAVL1Q15717 326 aaKnown RBP12.26□□□□□ -0.45
USP42-206ENST00000479544 HAGHQ16775 308 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 GLIPR1L1Q6UWM5 242 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 UBE3DQ7Z6J8 389 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 ZNF440Q8IYI8 595 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 LINC00518Q8N0U6 118 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 SPICQ8N5J4 248 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 SCGB1C1Q8TD33 95 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 HAS2Q92819 552 aa12.26□□□□□ -0.45
USP42-206ENST00000479544 HGDQ93099 445 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms