RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TIMD4Q96H15 378 aa10.35□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 POFUT1Q9H488 388 aa10.35□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 MSL2Q9HCI7 577 aa10.35□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ESM1Q9NQ30 184 aa10.35□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 DCAF16Q9NXF7 216 aa10.35□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 RHCGQ9UBD6 479 aa10.35□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 AP3M1Q9Y2T2 418 aa10.35□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ADAM18Q9Y3Q7 739 aa10.35□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 PLSCR5A0PG75 271 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 C12orf71A8MTZ7 269 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 EFCAB9A8MZ26 197 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 TPD52L2O43399 206 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 IFNW1P05000 195 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ADRA2CP18825 462 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 IFNA8P32881 189 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 HNRNPA0Q13151 305 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ZBED5Q49AG3 693 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 MESTQ5EB52 335 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 DCAF12L2Q5VW00 463 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SHQ1Q6PI26 577 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 VASH1Q7L8A9 365 aaPredicted RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 LRRC28Q86X40 367 aaPredicted RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ZDHHC22Q8N966 263 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 OR13C2Q8NGS9 318 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 RP9Q8TA86 221 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 NANPQ8TBE9 248 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SLC7A13Q8TCU3 470 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 GEMIN6Q8WXD5 167 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 LZICQ8WZA0 190 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 RCN3Q96D15 328 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 HAVCR1Q96D42 359 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SAMD8Q96LT4 415 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 Q96M85 177 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SIGLEC11Q96RL6 698 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 FNDC11Q9BVV2 318 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 PLA2G12AQ9BZM1 189 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 EGLN1Q9GZT9 426 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 NSRP1Q9H0G5 558 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ANKRD19PQ9H560 264 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 NMNAT1Q9HAN9 279 aaPredicted RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 PURGQ9UJV8 347 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 NDRG4Q9ULP0 352 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 NPTNQ9Y639 398 aa10.34□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 TEX13CA0A0J9YWL9 993 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 PRSS37A4D1T9 235 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 OR6C6A6NF89 314 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 H7C1C5 153 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 CXCR6O00574 342 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 NME4O00746 187 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 CTLA4P16410 223 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 EGR1P18146 543 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 RBMXP38159 391 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GUCA1AP43080 201 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 LIMS1P48059 325 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ARHGDIAP52565 204 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 FXYD6P3P58550 94 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 LSM6P62312 80 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 LCN6P62502 163 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 LIPEQ05469 1076 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ARPINQ7Z6K5 226 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZER1Q7Z7L7 766 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 POU5F2Q8N7G0 328 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DEFB108BQ8NET1 73 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GPX7Q96SL4 187 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 GAL3ST1Q99999 423 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 FUZQ9BT04 418 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 C7orf69Q9H7B7 122 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 EMC7Q9NPA0 242 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 NRIP3Q9NQ35 241 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 MMP26Q9NRE1 261 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TMEM106BQ9NUM4 274 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ARMCX1Q9P291 453 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SIGLEC7Q9Y286 467 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 STARD10Q9Y365 291 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 CAPN7Q9Y6W3 813 aa10.33□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 A0A1B0GWJ7 208 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPL8 197 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 A0A1W2PRQ8 180 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 A8MXK9 166 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 F5H0A9 414 aaPredicted RBP10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TRAPPC2LH3BP13 241 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TRIM77I1YAP6 450 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SGCEO43556 437 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 CCDC22O60826 627 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 RGS9O75916 674 aaPredicted RBP10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 COX4I1P13073 169 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SLC6A9P48067 706 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 HIST1H3AP68431 136 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TNFAIP6P98066 277 aaPredicted RBP10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SF3A3Q12874 501 aaKnown RBP eCLIP10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DGCR6Q14129 220 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 KCNMB1Q16558 191 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TMEM155Q4W5P6 130 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 IFI44LQ53G44 452 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 CCDC92Q53HC0 331 aaPredicted RBP10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZMAT1Q5H9K5 638 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 HIST2H3PS2Q5TEC6 136 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ARL9Q6T311 187 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 HACD2Q6Y1H2 254 aa10.32□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZNF730Q6ZMV8 503 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms