RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ENTPD5O75356 428 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 IGKV1-17P01599 117 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 BCHEP06276 602 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 SERPINE2P07093 398 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 RETP07949 1114 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 CCNB1P14635 433 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 EIF2S2P20042 333 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 GALP22466 123 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 PMELP40967 661 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 UQCRFS1P47985 274 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 CSNK1EP49674 416 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 MNAT1P51948 309 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 EIF3EP60228 445 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 ERCC8Q13216 396 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 RCAN2Q14206 197 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 GINS1Q14691 196 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 SF3A2Q15428 464 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 RGNQ15493 299 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 OR7A5Q15622 319 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 HSDL1Q3SXM5 330 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 THEM4Q5T1C6 240 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 ARL9Q6T311 187 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 FBXW12Q6X9E4 464 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 MBOAT1Q6ZNC8 495 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 Q6ZR03 302 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 EIF3MQ7L2H7 374 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 CMC1Q7Z7K0 106 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 TMEM150AQ86TG1 271 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 OR10G2Q8NGC3 310 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 OR5W2Q8NH69 310 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 NUBPLQ8TB37 319 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 TSEN15Q8WW01 171 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 EEF1AKMT3Q96AZ1 226 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 ECHDC3Q96DC8 303 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 PRRC1Q96M27 445 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 ZNF681Q96N22 645 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 C11orf70Q9BRQ4 267 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 RPP21Q9H633 154 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 TMEM165Q9HC07 324 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 RETNQ9HD89 108 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 LYARQ9NX58 379 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 UVRAGQ9P2Y5 699 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 OR12D3Q9UGF7 316 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 SLC17A4Q9Y2C5 497 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 MROH7-TTC4A0A0A0MT08 1334 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 DENND4AQ7Z401 1863 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 IGLV1-36A0A0B4J1U3 117 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 IGHV5-10-1A0A0J9YXX1 117 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 A0A1B0GW55 424 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 LYRM9A8MSI8 78 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 TEX46H3BTG2 121 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 CACNG3O60359 315 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 HLA-DPB1P04440 258 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 ERCC1P07992 297 aaPredicted RBP1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 DUX4L2P0CJ85 424 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 DUX4L3P0CJ86 424 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 DUX4L5P0CJ88 424 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 DUX4L6P0CJ89 424 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 DUX4L7P0CJ90 424 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 PGAM1P18669 254 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 F2RP25116 425 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 STOMP27105 288 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 CEACAM3P40198 252 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 NAMPTP43490 491 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 ATP5OP48047 213 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 MRPL19P49406 292 aaKnown RBP1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 RAB9AP51151 201 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 RAP1AP62834 184 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 SP4Q02446 784 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 SLAQ13239 276 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 TRAM2Q15035 370 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 PON2Q15165 354 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 FAM83EQ2M2I3 478 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 PGGHGQ32M88 737 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 TMEM53Q6P2H8 277 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 TTC23LQ6PF05 361 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 CEMP1Q6PRD7 247 aaPredicted RBP1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 PLET1Q6UQ28 207 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 SSX9Q7RTT3 188 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 BIVMQ86UB2 503 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 PGAM4Q8N0Y7 254 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 GABRG1Q8N1C3 465 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 OR52K2Q8NGK3 314 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 ABHD3Q8WU67 409 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 C8orf44Q96CB5 159 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 COL21A1Q96P44 957 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 GSDMAQ96QA5 445 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 RSPO3Q9BXY4 272 aaPredicted RBP1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 PARP12Q9H0J9 701 aaKnown RBP1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 EXO5Q9H790 373 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 UBE2ZQ9H832 354 aaPredicted RBP1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 ZDHHC4Q9NPG8 344 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 MTCH1Q9NZJ7 389 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 DUX4Q9UBX2 424 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 ZNF222Q9UK12 451 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 KCNE3Q9Y6H6 103 aa1.72□□□□□ -2.13
CCDC88A-212ENST00000474059 TET2Q6N021 2002 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 COL22A1Q8NFW1 1626 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 A0A1W2PP18 115 aa1.71□□□□□ -2.14
CCDC88A-212ENST00000474059 LRCOL1A6NCL2 159 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms