RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PGA3P0DJD8 388 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 GPR85P60893 370 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 TESK1Q15569 626 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 NNATQ16517 81 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 LHFPL2Q6ZUX7 228 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 STPG2Q8N412 459 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 OR5AP2Q8NGF4 316 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 OR6S1Q8NH40 331 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 TRIB1Q96RU8 372 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 CXXC1Q9P0U4 656 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-209ENST00000472056 DOCK4Q8N1I0 1966 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 A0A1W2PP55 124 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 H3BML4 177 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 PLA1AQ53H76 456 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 OR2G6Q5TZ20 316 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 SAXO2Q658L1 398 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 GPR173Q9NS66 373 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 OR2M5A3KFT3 312 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 OR10J4P0C629 311 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 DEFA4P12838 97 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 HOXA11P31270 313 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF252P-AS1Q0IIN9 211 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 SYT11Q9BT88 431 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 SLC25A19Q9HC21 320 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 RAB27BO00194 218 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 CBX7O95931 251 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 LGI1O95970 557 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 GABRA4P48169 554 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 FAM180BQ6P0A1 224 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 EDARADDQ8WWZ3 215 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 NUDT22Q9BRQ3 303 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 DND1Q8IYX4 353 aaKnown RBP12.24□□□□□ -0.45
COL6A3-209ENST00000472056 LILRA2Q8N149 483 aa12.24□□□□□ -0.45
COL6A3-209ENST00000472056 C1orf220Q5T0J3 134 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 KCNE4Q8WWG9 221 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF426Q9BUY5 554 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 KCMF1Q9P0J7 381 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 NOTCH3Q9UM47 2321 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 SERINC4A6NH21 518 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 IFITM5A6NNB3 132 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF732B4DXR9 585 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 FBXO45P0C2W1 286 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 NID1P14543 1247 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 AQP6Q13520 282 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 CLEC9AQ6UXN8 241 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 RHOUQ7L0Q8 258 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 GRASPQ7Z6J2 395 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-209ENST00000472056 PLPP6Q8IY26 295 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 PIGCQ92535 297 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 CHST8Q9H2A9 424 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 OSGIN2Q9Y236 505 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 NUMBLQ9Y6R0 609 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 IGKV6-21A0A0C4DH24 114 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 HTR5AP47898 357 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 SNU13P55769 128 aaKnown RBP12.23□□□□□ -0.45
COL6A3-209ENST00000472056 EVX2Q03828 476 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 AKR7LQ8NHP1 331 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 SEC22AQ96IW7 307 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 UCK1Q9HA47 277 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 OBP2BQ9NPH6 170 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 ADRA1AP35348 466 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 SHHQ15465 462 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 TMEM217Q8N7C4 229 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 SLC38A9Q8NBW4 561 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 EGLN2Q96KS0 407 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 C2orf50Q96LR7 162 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 RALYQ9UKM9 306 aaKnown RBP12.23□□□□□ -0.45
COL6A3-209ENST00000472056 KDM4EB2RXH2 506 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-209ENST00000472056 TEAD1P28347 426 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 LIPAP38571 399 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 XCR1P46094 333 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 OR2B8PP59922 312 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 IL22RA1Q8N6P7 574 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 WDR83Q9BRX9 315 aaKnown RBP12.23□□□□□ -0.45
COL6A3-209ENST00000472056 NKX6-3A6NJ46 265 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 MEOX2P50222 304 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 HNRNPA1L2Q32P51 320 aaKnown RBP12.23□□□□□ -0.45
COL6A3-209ENST00000472056 EXD3Q8N9H8 876 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 ADOQ96SZ5 270 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 SUCNR1Q9BXA5 334 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 CHST6Q9GZX3 395 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 PLXNA1Q9UIW2 1896 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 ZAR1LA6NP61 321 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 GPR31O00270 319 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 SIGLEC6O43699 453 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 EIF4E2O60573 245 aaKnown RBP12.23□□□□□ -0.45
COL6A3-209ENST00000472056 WNT11O96014 354 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 OR13C7P0DN81 318 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 FAHD2BQ6P2I3 314 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-209ENST00000472056 DHRS11Q6UWP2 260 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 MAMDC4Q6UXC1 1216 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 FAHD2AQ96GK7 314 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 C3orf30Q96M34 536 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 DCBLD2Q96PD2 775 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 FKRPQ9H9S5 495 aa12.23□□□□□ -0.45
COL6A3-209ENST00000472056 MRPL33O75394 65 aaKnown RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 TOMM34Q15785 309 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 SMN1Q16637 294 aaKnown RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 UBAC2Q8NBM4 344 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF480Q8WV37 535 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms