RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 B3GNT2Q9NY97 397 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 CRNNQ9UBG3 495 aaPredicted RBP10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 KLHL21Q9UJP4 597 aa10.29□□□□□ -0.76
SQSTM1-206ENST00000466342 A0A0A6YYJ9 748 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 A0A1W2PPL8 197 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 TMEM89A2RUT3 159 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 OR6C68A6NDL8 312 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 DCTN6O00399 190 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC16A7O60669 478 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 KHDRBS3O75525 346 aaKnown RBP10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 UBL3O95164 117 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 IFNGP01579 166 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 IGKV3-15P01624 115 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 IGLV1-44P01699 117 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 HLA-HP01893 362 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 CD79AP11912 226 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 BMP4P12644 408 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 CBR1P16152 277 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 POU1F1P28069 291 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 CRABP1P29762 137 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 APOBEC3AP31941 199 aaPredicted RBP10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 GUCA1AP43080 201 aaPredicted RBP10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 GIPRP48546 466 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 CRISP1P54107 249 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 CDK5Q00535 292 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 SPOCK1Q08629 439 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 GINS1Q14691 196 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 GSG1Q2KHT4 349 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 CR1LQ2VPA4 569 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 C3orf36Q3SXR2 165 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 ZNF362Q5T0B9 420 aaPredicted RBP10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 FAM27BQ5VT28 67 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 C11orf71Q6IPW1 123 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 DPPA2Q7Z7J5 298 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 MDP1Q86V88 176 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 SKA3Q8IX90 412 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 IQCF1Q8N6M8 205 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC37A3Q8NCC5 494 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 NPEPL1Q8NDH3 523 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 DDOQ99489 341 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 SH3GL3Q99963 347 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 RBM4BQ9BQ04 359 aaKnown RBP10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 RBM4Q9BWF3 364 aaKnown RBP10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 CACNG6Q9BXT2 260 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 FN3KQ9H479 309 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 SEC61A2Q9H9S3 476 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 SIAEQ9HAT2 523 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 SLC25A19Q9HC21 320 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 RPRD1BQ9NQG5 326 aaKnown RBP10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 FKBP7Q9Y680 259 aa10.28□□□□□ -0.76
SQSTM1-206ENST00000466342 IGLV1-36A0A0B4J1U3 117 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 IGHV1-18A0A0C4DH31 117 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 RIIAD1A6NNX1 92 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 MITFO75030 526 aaPredicted RBP10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 VENTXO95231 258 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 TGFAP01135 160 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 CSF3P09919 207 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF3P17036 446 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 MSR1P21757 451 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 LAP3P28838 519 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 ARR3P36575 388 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 PTDSS1P48651 473 aaKnown RBP10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 ESRRGP62508 458 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 ACTG1P63261 375 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 PIGFQ07326 219 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 CRMP1Q14194 572 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 SGCAQ16586 387 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 SLC36A2Q495M3 483 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 ACSM5Q6NUN0 579 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 B3GLCTQ6Y288 498 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 SLC16A14Q7RTX9 510 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 ZBTB46Q86UZ6 589 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 GLB1L2Q8IW92 636 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 OR6V1Q8N148 313 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 LRRC18Q8N456 261 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 CYB561A3Q8NBI2 242 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 GCDHQ92947 438 aaPredicted RBP10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF75AQ96N20 296 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 TSSK2Q96PF2 358 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 SLC38A2Q96QD8 506 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 CIB1Q99828 191 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 C9orf16Q9BUW7 83 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 RACGAP1Q9H0H5 632 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 KCNN2Q9H2S1 579 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 RERGLQ9H628 205 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF696Q9H7X3 374 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 NOX3Q9HBY0 568 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 POLE4Q9NR33 117 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 CMC2Q9NRP2 79 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 ENOPH1Q9UHY7 261 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 TMEFF2Q9UIK5 374 aaPredicted RBP10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 B9D1Q9UPM9 204 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 MOKQ9UQ07 419 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 COA3Q9Y2R0 106 aaPredicted RBP10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 ATP23Q9Y6H3 246 aa10.27□□□□□ -0.77
SQSTM1-206ENST00000466342 PLCE1Q9P212 2302 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 H7C417 338 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 EI24O14681 340 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 RAB36O95755 333 aa10.26□□□□□ -0.77
SQSTM1-206ENST00000466342 BAG2O95816 211 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms