RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 INMT-MINDY4F8WBC2 141 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 TRAF3IP2O43734 574 aaPredicted RBP12.17□□□□□ -0.46
CLK3-203ENST00000454830 CD1AP06126 327 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 SLC6A9P48067 706 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 TATDN3Q17R31 274 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 SLC25A53Q5H9E4 307 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 MCHR2Q969V1 340 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 RNF166Q96A37 237 aaPredicted RBP12.17□□□□□ -0.46
CLK3-203ENST00000454830 GFI1Q99684 422 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 NAA11Q9BSU3 229 aaPredicted RBP12.17□□□□□ -0.46
CLK3-203ENST00000454830 PLA2G3Q9NZ20 509 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 CACNG2Q9Y698 323 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 OTOGLQ3ZCN5 2332 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 A0A087WZY1 265 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 PTBP1P26599 531 aaKnown RBP eCLIP12.17□□□□□ -0.46
CLK3-203ENST00000454830 ADH6P28332 368 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 NR4A2P43354 598 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 CBX3Q13185 183 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 HDDC2Q7Z4H3 204 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 ZNF283Q8N7M2 679 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 MIB2Q96AX9 1013 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 SOSTQ9BQB4 213 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 OR5V1Q9UGF6 321 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 R4GMQ9 66 aa12.17□□□□□ -0.46
CLK3-203ENST00000454830 ZFHX2Q9C0A1 2572 aaPredicted RBP12.16□□□□□ -0.46
CLK3-203ENST00000454830 ORC5O43913 435 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 HPP00738 406 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 MT-ND4P03905 459 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 SERPINA7P05543 415 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 CASRP41180 1078 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 CLDN20P56880 219 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 CSNK2A1P68400 391 aaPredicted RBP12.16□□□□□ -0.46
CLK3-203ENST00000454830 SIAH3Q8IW03 269 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 GDF2Q9UK05 429 aaPredicted RBP12.16□□□□□ -0.46
CLK3-203ENST00000454830 EXPH5Q8NEV8 1989 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 RER1O15258 196 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 DKK1O94907 266 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 CHAF1BQ13112 559 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.16□□□□□ -0.46
CLK3-203ENST00000454830 ZNF385AQ96PM9 386 aaKnown RBP12.16□□□□□ -0.46
CLK3-203ENST00000454830 CDC6Q99741 560 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 CELSR3Q9NYQ7 3312 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 DOCK10Q96BY6 2186 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 FREM2Q5SZK8 3169 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 A0A0J9YW62 118 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 LOC101059948A0A1B0GTJ6 334 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 AQP7P3A6NL99 342 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 SYT7O43581 403 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 ZIC3O60481 467 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 RFPL3SP0C7P2 107 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 SFRP4Q6FHJ7 346 aaPredicted RBP12.16□□□□□ -0.46
CLK3-203ENST00000454830 NUDT15Q9NV35 164 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 IL17BQ9UHF5 180 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 CAMK2AQ9UQM7 478 aa12.16□□□□□ -0.46
CLK3-203ENST00000454830 MED13Q9UHV7 2174 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 ZNF407Q9C0G0 2248 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 TRBV5-5A0A0J9YX44 114 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 RAF1P04049 648 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 RAB11BQ15907 218 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 DMRTC1Q5HYR2 192 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 TRILQ7L0X0 811 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 RNF138Q8WVD3 245 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 ROBO4Q8WZ75 1007 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 FAM71F1Q96KD3 344 aaPredicted RBP12.15□□□□□ -0.46
CLK3-203ENST00000454830 A0A1W2PQ72 361 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 F5H5K5 113 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 CXCL13O43927 109 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 PGA4P0DJD7 388 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 PGA3P0DJD8 388 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 POU3F2P20265 443 aaPredicted RBP12.15□□□□□ -0.46
CLK3-203ENST00000454830 CDK2P24941 298 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 GIFP27352 417 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 GDNFP39905 211 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 ROM1Q03395 351 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 SNTB2Q13425 540 aaKnown RBP12.15□□□□□ -0.46
CLK3-203ENST00000454830 GLT8D1Q68CQ7 371 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 ZNF704Q6ZNC4 412 aaPredicted RBP12.15□□□□□ -0.46
CLK3-203ENST00000454830 DBX2Q6ZNG2 339 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 DND1Q8IYX4 353 aaKnown RBP12.15□□□□□ -0.46
CLK3-203ENST00000454830 CAPSLQ8WWF8 208 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 FGGYQ96C11 551 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 PROK2Q9HC23 129 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 ABI3Q9P2A4 366 aa12.15□□□□□ -0.46
CLK3-203ENST00000454830 A0A1W2PNV4 684 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 MEIS3P1A6NDR6 274 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 LMX1BO60663 402 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 EIF1BO60739 113 aaKnown RBP12.15□□□□□ -0.47
CLK3-203ENST00000454830 TMIGD3P0DMS9 266 aaPredicted RBP12.15□□□□□ -0.47
CLK3-203ENST00000454830 POU3F4P49335 361 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 CCR6P51684 374 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 CARD18P57730 90 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 GABREP78334 506 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 TRIP6Q15654 476 aaKnown RBP12.15□□□□□ -0.47
CLK3-203ENST00000454830 PLA2G2CQ5R387 149 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 ZNF627Q7L945 461 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 CATSPERDQ86XM0 798 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 CACNG6Q9BXT2 260 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 KLHL9Q9P2J3 617 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 RCE1Q9Y256 329 aa12.15□□□□□ -0.47
CLK3-203ENST00000454830 PCDHGA9Q9Y5G4 932 aaKnown RBP12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms